| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,892,176 – 17,892,271 |
| Length | 95 |
| Max. P | 0.994648 |
| Location | 17,892,176 – 17,892,271 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 77.13 |
| Mean single sequence MFE | -25.87 |
| Consensus MFE | -12.94 |
| Energy contribution | -13.08 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.44 |
| Mean z-score | -3.28 |
| Structure conservation index | 0.50 |
| SVM decision value | 2.50 |
| SVM RNA-class probability | 0.994648 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17892176 95 + 22407834 AGGCAACUGCAGG------GCUAUCUUGAGCCAGUUGA-AAAAUAAAUAGCUAUGGCUGAAUGGCCAAGAUGCUAGAAGGCAGAA-UAUAAACAAAAAACUAA ......((((..(------((.((((((.(((((((..-..)))...((((....))))..))))))))))))).....))))..-................. ( -27.10) >DroSec_CAF1 111856 95 + 1 AGGCAACUGCAGG------GCUAUCUUGAGCCAUUAGA-AAAAUAAAUAGCUAUGGCUCAAUGGCCAAGAUGCUAGAAGGCAGAA-UAUAAACAAAAAACUGA ((....)).((((------(((((..((((((((.((.-...........))))))))))))))))....((((....))))...-.............))). ( -26.90) >DroSim_CAF1 89519 95 + 1 AGGCAACUGCAGG------GCUAUCUUGAGCCAGUAGA-AAAAUAAAUAGCUAUGGCUCAGUGGCCAAGAUGCUAGAAGGCAGAA-UAUAAACAAAAAACUAA ..((..(((((.(------(((((..(((((((.(((.-...........))))))))))))))))....))).))...))....-................. ( -26.10) >DroEre_CAF1 101616 95 + 1 AGGCAACUGCAGG------GCUAUCUUGAGCCAGUAGA-AAAAUAAAUAACUGUGGCCCAAUGGCCAAGAGGCUGGCAGGCAGGA-UAUAAACAAAAAACUAA ((....)).....------..(((((((.((((((...-..............(((((....)))))....))))))...)))))-))............... ( -25.00) >DroYak_CAF1 108921 101 + 1 AGGCAGCUGCAGGCAGCUGGCCAUCUUGAGCCAGUAGA-AAAAUAAAUAACUAUGGCUCGAUAGCCAAUGUGCUAGAAGGCAGGA-UGUAAACAAAAAACUAA ...((((((....))))))(((.((((((((((.(((.-...........)))))))))))((((......)))))).)))....-................. ( -30.70) >DroAna_CAF1 106622 83 + 1 AGGCAGCUGCAGG------ACUAGCUUAGGGCGGAUGCUUUCACAAACAAAUGUGGUUCAAUAGUGAAGG--AUAUGAGCCAGGAGUAUGA------------ ..((....))...------....((((..(((..((((((((((...................)))))))--.)))..)))..))))....------------ ( -19.41) >consensus AGGCAACUGCAGG______GCUAUCUUGAGCCAGUAGA_AAAAUAAAUAACUAUGGCUCAAUGGCCAAGAUGCUAGAAGGCAGAA_UAUAAACAAAAAACUAA ......((((...............((((((((....................))))))))((((......))))....)))).................... (-12.94 = -13.08 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:44 2006