| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,890,425 – 17,890,523 |
| Length | 98 |
| Max. P | 0.681303 |
| Location | 17,890,425 – 17,890,523 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 79.96 |
| Mean single sequence MFE | -23.83 |
| Consensus MFE | -12.73 |
| Energy contribution | -13.20 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.681303 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17890425 98 + 22407834 G-AAUAUGCAA-AGGCAAUAAUUCUUGGAGCAAGUGUAACAAGAAAAUAAGCGCAGUGGU------AGUGGCAAUGGCAAUGGAAAUGGAAAUGCUG-AGCAGAAUC----------- .-....(((..-.((((....((((((..((....))..)))))).....((.((...((------....))..))))..............)))).-.))).....----------- ( -19.00) >DroPse_CAF1 181875 112 + 1 GGAAUAUGCAAAAGGCAAUAAUUCUUGGAGCAAGUGUAACAAGAAAAUAAGGGCAAUGGC------AGUGGCAGAGGCAGGGGCAGGGGCAGGGCAGAGGCACUGGCAACUGCAGGGA ......((((....((.....((((((..((....))..)))))).......))..((.(------((((.(....((....((....))...))...).))))).))..)))).... ( -28.70) >DroSec_CAF1 110088 98 + 1 G-AAUAUGCAA-AGGCAAUAAUUCUUGGAGCAAGUGUAACAAGAAAAUAAGCGCAGUGGC------AGUGGCAAUGGCAAUAGAAAUGGAAAUGCUG-AGCAGAAUC----------- .-....(((..-.((((....((((((..((....))..)))))).....((.((...((------....))..))))..............)))).-.))).....----------- ( -20.70) >DroEre_CAF1 99862 104 + 1 G-AAUAUGCAA-AGGCAAUAAUUCUUGGAGCAAGUGUAACAAGAAAAUAAGCGCAGUAGCUGUGGCAGUGGCAAUGGUAAUGGAAAUGGAAAUGCUG-AGCAGAAUC----------- .-....(((..-..)))....((((((..((....))..)))))).....((.(((((.((((..(....((....))....)..))))...)))))-.))......----------- ( -22.40) >DroYak_CAF1 107153 98 + 1 G-AAUAUGCAA-AGGCAAUAAUUCUUGGAGCAAGUGUAACAAGAAAAUAAGCGCAGUGCU------AGUGGCAGUGGCAAUGGAAAUGGAAAUGCUG-AGCAGAAUC----------- .-....(((..-.((((....((((((..((....))..)))))).....((.((.(((.------....))).))))..............)))).-.))).....----------- ( -24.40) >DroPer_CAF1 182815 107 + 1 GGAAUAUGCAAAAGGCAAUAAUUCUUGGAGCAAGUGUAACAAGAAAAUAAGGGCAAUGGC------UGUGGCAGUGGCAGGGGCAGUGGCAGG-----GGCAGGGGCAACUGCAGGGA ......((((...........((((((..((....))..)))))).......((..((.(------(.((.((.((.(...).)).)).)).)-----).))...))...)))).... ( -27.80) >consensus G_AAUAUGCAA_AGGCAAUAAUUCUUGGAGCAAGUGUAACAAGAAAAUAAGCGCAGUGGC______AGUGGCAAUGGCAAUGGAAAUGGAAAUGCUG_AGCAGAAUC___________ ......(((....(((.....((((((..((....))..)))))).......((....((..........))....))...............)))...)))................ (-12.73 = -13.20 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:43 2006