Locus 6382

Sequence ID 2L_DroMel_CAF1
Location 17,887,788 – 17,887,889
Length 101
Max. P 0.968615
window10190

overview

Window 0

Location 17,887,788 – 17,887,889
Length 101
Sequences 4
Columns 107
Reading direction reverse
Mean pairwise identity 87.40
Mean single sequence MFE -29.86
Consensus MFE -24.59
Energy contribution -25.02
Covariance contribution 0.44
Combinations/Pair 1.12
Mean z-score -2.42
Structure conservation index 0.82
SVM decision value 1.63
SVM RNA-class probability 0.968615
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17887788 101 - 22407834
GCGUAAGUCGUUGAGGGUCUUCUCAGGGGCUCUUGCUCAUUAAAGAAUU-----UUGUUGCUGCGA-AGCAAGUUUUUAAUUUUUCUCCAACGAUUUAAGCACUGUA
((.((((((((((.(((((((.....((((....))))....))))...-----...(((((....-))))).............))))))))))))).))...... ( -29.00)
>DroSec_CAF1 107404 102 - 1
GCGUAAGUCGUUGAGGGUCUUCUCAGGGGCUCUUGCUCAUUAAGAAAUU-----UUGUUGCUGCGAAAGCCAGUUUUUAAGUUUUCUCCAACGAUUAUAGCACUGUA
((...(((((((((((((((......))))))).........(((((.(-----(((..(((((....).))))...)))).))))).))))))))...))...... ( -29.90)
>DroEre_CAF1 97285 102 - 1
GCGUAAGUCGUUGAAAGUCUUCUCAGGGGCUCUUGCUCAUUAAAGAAUU-----UUGAUGCUGCGAAAGCCAGUUUUUAAUUUUGCUCCAGCGAUUCAAGCAAUGCA
((...((((((((..............((((.((((.(((((((....)-----))))))..)))).))))(((..........))).))))))))...))...... ( -26.00)
>DroYak_CAF1 101964 107 - 1
GCGUAAGUCGUUGACAGUCUUCUCAGGGGCUAUUGCUCAUUAAAGAAUUUGUUUUUUUUGCUGCGAAAGCCAGUUUUUAAUUCUUCUCCAACGACUUAUGCAUUGUA
(((((((((((((.............((((....))))....(((((((..........(((((....).))))....)))))))...)))))))))))))...... ( -34.54)
>consensus
GCGUAAGUCGUUGAGAGUCUUCUCAGGGGCUCUUGCUCAUUAAAGAAUU_____UUGUUGCUGCGAAAGCCAGUUUUUAAUUUUUCUCCAACGAUUUAAGCACUGUA
((.((((((((((....((((.....((((....))))....)))).............(((((....)).)))..............)))))))))).))...... (-24.59 = -25.02 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:40 2006