Locus 6381

Sequence ID 2L_DroMel_CAF1
Location 17,884,515 – 17,884,609
Length 94
Max. P 0.973751
window10189

overview

Window 9

Location 17,884,515 – 17,884,609
Length 94
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 89.35
Mean single sequence MFE -34.00
Consensus MFE -30.01
Energy contribution -29.23
Covariance contribution -0.78
Combinations/Pair 1.16
Mean z-score -2.31
Structure conservation index 0.88
SVM decision value 1.72
SVM RNA-class probability 0.973751
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17884515 94 + 22407834
UGAGAGAAAGCGGAGAACGAGUUUCCCUUGUUCAUUUAGCAGUCAAACGGAGUUUGCCAGUGUGGAGACAUGCCUGUCUCCGCUGGGUUUCCGU
.....((..((...(((((((.....))))))).....))..))..((((((...(((...(((((((((....)))))))))..))))))))) ( -35.30)
>DroPse_CAF1 176100 92 + 1
--AGAGCGUGGGGUGAAUGGGUUUUCCUUGUUCAUUUAGCAGUCAAACGGAGUUUGCCAGCAUGGAGACAUGCCUGUCUCCGUCGGGUUUCCGU
--...((...(((((((..((.....))..))))))).))......((((((...(((.(.(((((((((....)))))))))).))))))))) ( -34.40)
>DroSec_CAF1 104102 94 + 1
UGAGAGAAAGCGGAGAACGAGUUUCCCUUGUUCAUUUAGCAGUCAAACGGAGUUUGCCAGUGUGGAGACAUCCCUGUCUCCGCUGGGUUUCCGU
.....((..((...(((((((.....))))))).....))..))..((((((...(((...(((((((((....)))))))))..))))))))) ( -35.30)
>DroYak_CAF1 98666 94 + 1
UGAGAGAAAGCGGAGAACGAGUUUCCCUUGUUCAUUUAGCAGUCAAACGGAGUUUGCCAGUGUGGAGACAUGCCUGUCUCCGUUGGGUUUCCGU
.........((((((((((((.....))))))).......(..(.(((((((...((..(((((....)))))..))))))))).)..)))))) ( -31.20)
>DroAna_CAF1 99124 93 + 1
UGCGA-AAAGCAUAGAAUGAGGUUUCCUUGUUCAUUUAGCAGUCAAACGGAGUUUGCCAGUGUGGAGACAUGCCUGUCUCCGCUGGGUUUCCGC
(((..-...)))..(((..(((...)))..)))..............(((((...(((...(((((((((....)))))))))..)))))))). ( -33.40)
>DroPer_CAF1 177121 92 + 1
--AGAGCGUGGGGUGAAUGGGUUUUCCUUGUUCAUUUAGCAGUCAAACGGAGUUUGCCAGCAUGGAGACAUGCCUGUCUCCGUCGGGUUUCCGU
--...((...(((((((..((.....))..))))))).))......((((((...(((.(.(((((((((....)))))))))).))))))))) ( -34.40)
>consensus
UGAGAGAAAGCGGAGAACGAGUUUCCCUUGUUCAUUUAGCAGUCAAACGGAGUUUGCCAGUGUGGAGACAUGCCUGUCUCCGCUGGGUUUCCGU
..............(((((((.....))))))).............((((((...(((...(((((((((....)))))))))..))))))))) (-30.01 = -29.23 +  -0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:39 2006