| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,870,055 – 17,870,147 |
| Length | 92 |
| Max. P | 0.564279 |
| Location | 17,870,055 – 17,870,147 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 79.86 |
| Mean single sequence MFE | -24.30 |
| Consensus MFE | -16.42 |
| Energy contribution | -16.82 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.564279 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17870055 92 + 22407834 CACACCUUAAUUCUGAGGCUUGUGCUGCCAAUUCGAAAUCAAAUUUUCUUUAU----GGCCGGUUCAGUU-UUACCGAAUCAGGUCGAAGGGAUGUC ((..((((...((((((((....)))((((....((((......))))....)----)))((((......-..))))..)))))...))))..)).. ( -24.60) >DroSec_CAF1 89472 92 + 1 CACACCUUAAUUCUGAGGCUUGUGCUGCCAAUUCGAAAUCAAAUUUGCUUUAU----GACCGGUUCGGUU-UUACCGAAUCAGGUCGAAGGGAUGUC ((..((((........(((.......))).......................(----(((((((((((..-...))))))).)))))))))..)).. ( -26.50) >DroSim_CAF1 72215 92 + 1 NNNNNNNNNNNNNNNAGGCUUGUGCUGCCAAUUCAAAAUCAAAUUUUCUUUAU----GGCCGGUUCGGUU-UUACCGAAUCAGGUCGAAGGGAUGUC ................(((.......))).................(((((.(----(((((((((((..-...))))))).))))).))))).... ( -24.40) >DroEre_CAF1 79370 92 + 1 CACACCUUAAUUCUGAGGUUUGUGCUGCCAAUUCGAAAUCAAAUUUUCUUUAC----GGCCCGUUCGGUU-CUACCGAAUCAGGUCGAAGGGAUAUC (((((((((....))))))..))).....................((((((.(----((((.((((((..-...))))))..))))))))))).... ( -24.90) >DroYak_CAF1 81643 92 + 1 CACAGCUUUAUUCUCAGGUUUGUGCUGCCAAUUCGAAAUCAAAUUUUCUUUAU----GGCCGGCUCGGUU-UUACCGAAUCAGGUCGGAGGGAUAUC ..........(((((.(..(((.(((((((....((((......))))....)----)).))))((((..-...))))..)))..).)))))..... ( -22.40) >DroAna_CAF1 83321 95 + 1 CUGAUCCGAAUCCUGAGGUUUGUGCUGCCAAUUUGAAAUCAAAUUUUCCUUAUCACUGGCCGGUA-GGUUGCUAAGUUCCUGGGUCGGUG-GCUGUG ......((((((....)))))).((.(((((((((....)))))).........(((((((..((-((..........))))))))))))-)).)). ( -23.00) >consensus CACACCUUAAUUCUGAGGCUUGUGCUGCCAAUUCGAAAUCAAAUUUUCUUUAU____GGCCGGUUCGGUU_UUACCGAAUCAGGUCGAAGGGAUGUC ................(((.......)))..(((((((......)))).........((((((((((((....)))))))).)))))))........ (-16.42 = -16.82 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:36 2006