Locus 6378

Sequence ID 2L_DroMel_CAF1
Location 17,856,419 – 17,856,522
Length 103
Max. P 0.689893
window10185

overview

Window 5

Location 17,856,419 – 17,856,522
Length 103
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 78.43
Mean single sequence MFE -20.95
Consensus MFE -13.55
Energy contribution -13.78
Covariance contribution 0.23
Combinations/Pair 1.17
Mean z-score -1.44
Structure conservation index 0.65
SVM decision value 0.33
SVM RNA-class probability 0.689893
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17856419 103 + 22407834
UCUUUGUGCAUUGCAAAUGAAGCCACAAUAAUAAAAACCCC-AGGCUCUCAUGUGAAUACACAGGGAAUAUGUGGGUCCACAUUUGAAAUGAGCUAAUAUUUAU
((((((((.(((.((.((((((((.................-.)))).)))).))))).))))))))..(((((....)))))..................... ( -22.67)
>DroPse_CAF1 145591 80 + 1
UCUUUGUGCAUUGCAAAUGAAGCCACAAUAAUAAAAACCCCUAGACUCUCAUAUG----UACAGCGUAUCUGUGUGUGUGCUGG--------------------
...(((((....((.......)))))))............((((.....((((..----(((((.....)))))..))))))))-------------------- ( -13.40)
>DroSec_CAF1 75959 103 + 1
UCUUUGUGCAUUGCAAAUGAAGCCACAAUAAUAAAAACACC-AGGCUCUCAUGUGAAUACACAGGGAAUAUGUGGGUUCACAUUUAAAAUGUGCAAAUAUUUAU
..((((..((((....((((((((.................-.)))).))))(((((..((((.......))))..)))))......))))..))))....... ( -26.77)
>DroSim_CAF1 68166 103 + 1
UCUUUGUGCAUUGCAAAUGAAGCCACAAUAAUAAAAACCCC-AGGCUCUCAUGUGAAUACACAGGGAAUAUGUGGGUUCACAUUUAAAAUGUGCAAAUAUUUAU
..((((..((((....((((((((.................-.)))).))))(((((..((((.......))))..)))))......))))..))))....... ( -26.77)
>DroEre_CAF1 65976 103 + 1
UCUUUGUGCAUUGCAAAUGAAGCCACAAUAAUAAAAACCCC-AGGCUCUCAUGUGAAUACACAGGGAAUAUGUGGGUCCACAUUUAAAAUGGGUAAAUAUUUGU
((((((((.(((.((.((((((((.................-.)))).)))).))))).))))))))..(((((....)))))..................... ( -22.67)
>DroPer_CAF1 146407 80 + 1
UCUUUGUGCAUUGCAAAUGAAGCCACAAUAAUAAAAACCCCUAGACUCUCAUAUG----UACAGCGUAUCUGUGUGUGUGCUGG--------------------
...(((((....((.......)))))))............((((.....((((..----(((((.....)))))..))))))))-------------------- ( -13.40)
>consensus
UCUUUGUGCAUUGCAAAUGAAGCCACAAUAAUAAAAACCCC_AGGCUCUCAUGUGAAUACACAGGGAAUAUGUGGGUCCACAUUUAAAAUG_GCAAAUAUUUAU
((((((((.....((.((((((((...................)))).)))).))....))))))))..(((((....)))))..................... (-13.55 = -13.78 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:35 2006