Locus 6377

Sequence ID 2L_DroMel_CAF1
Location 17,853,946 – 17,854,046
Length 100
Max. P 0.996657
window10184

overview

Window 4

Location 17,853,946 – 17,854,046
Length 100
Sequences 4
Columns 111
Reading direction reverse
Mean pairwise identity 83.48
Mean single sequence MFE -33.20
Consensus MFE -26.97
Energy contribution -27.21
Covariance contribution 0.25
Combinations/Pair 1.13
Mean z-score -3.05
Structure conservation index 0.81
SVM decision value 2.73
SVM RNA-class probability 0.996657
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17853946 100 - 22407834
ACUGUGGGAAAGUCGUGGGCGGGAAGACAAUGGCGAACUGGCAGAGAAAAGUUGCAGCUGG-----------AAGCUGGUAUAGCCAAGCGGAAGCAAAACUUGCCGGCAA
..............((.((((((.......((((..((..((.......(((....)))..-----------..))..))...)))).((....))....)))))).)).. ( -31.30)
>DroSec_CAF1 67955 102 - 1
---------AAAUCGUGGGCGAGAAGGCAAUGGCGAACUGGCAGAGCAAAGUUGCAGCUGGGAAUGCUGGAAAAGCUGGGAUAGCGAAGCGGAAGCAAAACUUGCCGGCAA
---------.....((.((((((...(((((.((...........))...))))).((((.....(((.....))).....))))...((....))....)))))).)).. ( -34.10)
>DroSim_CAF1 65732 111 - 1
ACUGUGGGAAAAUCGUGGGCGAGAAGACAAUGGCGAACUGGCAGAGCAAAGUUGCAGCUGGGAAUGCUGGAAAAGCUGGGAUAGCGAAGCGGAAGCAAAACUUGCCGGCAA
..............((.((((((.........((...(..((...(((....)))(((.......)))......))..)....))...((....))....)))))).)).. ( -32.60)
>DroYak_CAF1 65572 110 - 1
ACUGUAGGAAAAUCGUGGGCAAGAAGACAGUUGCAAACUGGCAGAGGAAAGUU-CUGCUGGGAGAUGUGGGAAAGCUGGGAUAGCGAAGCGGAAGCAAAACUUGCCGGCAA
..............((.((((((....((((((((..(..((((((.....))-))))..)....))).....)))))..........((....))....)))))).)).. ( -34.80)
>consensus
ACUGUGGGAAAAUCGUGGGCGAGAAGACAAUGGCGAACUGGCAGAGCAAAGUUGCAGCUGGGAAUGCUGGAAAAGCUGGGAUAGCGAAGCGGAAGCAAAACUUGCCGGCAA
..............((.((((((.......((((.((((..........)))).(((((..............))))).....)))).((....))....)))))).)).. (-26.97 = -27.21 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:34 2006