Locus 6376

Sequence ID 2L_DroMel_CAF1
Location 17,852,924 – 17,853,019
Length 95
Max. P 0.500000
window10183

overview

Window 3

Location 17,852,924 – 17,853,019
Length 95
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 80.52
Mean single sequence MFE -22.45
Consensus MFE -11.95
Energy contribution -14.40
Covariance contribution 2.45
Combinations/Pair 1.11
Mean z-score -1.96
Structure conservation index 0.53
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17852924 95 + 22407834
AAGGAAGCCGCUGCCAGAAGCGCACAAAAAAACACCAGCGAACACCAACUUUGCGUACUGGAAUUUCUAAUACGCUUGCGAACUGCUUGGCUUUC
..((((((((..((.((...((((.............(((((.......)))))(((.(((.....))).)))...))))..)))).)))))))) ( -24.70)
>DroSec_CAF1 66931 95 + 1
AAGGAAGCCGCUGCCAGAAGCACACAAAAAAACACCAGCGAACACCAACUUUGCGUACUGGAAUUUCUAAUACGCUGGCAAACUGCUUGGCUUUC
..(((((((((((((((....................(((((.......)))))(((.(((.....))).))).))))))....))..))))))) ( -25.50)
>DroSim_CAF1 64709 95 + 1
AAGGAAGCCGCUGCCAGAAGCACACAAAAAAACACCAGCGAACACCAACUUUGCGUACUGGAAUUUCUAAUACGCUGGCAAACUGCUUGGCUUUC
..(((((((((((((((....................(((((.......)))))(((.(((.....))).))).))))))....))..))))))) ( -25.50)
>DroEre_CAF1 62539 79 + 1
---------------AGCAGCACACAAA-AAACACCAGCGAACAGCAACUUUGCGUACUGGAAUUUCUAAUACGCUGGCAAACUCCUUGGCUUUU
---------------...(((.((....-.....(((((.....(((....)))(((.(((.....))).)))))))).........)))))... ( -16.97)
>DroYak_CAF1 64010 94 + 1
AAGGAAGCCGCUGCCAGAAGCACACAAA-AAACACCAGCGAACACCAACUUUGCGUACUGGAAUUUCUAAUACGCUGGCAAACUGCUUGGCUUUU
..(((((((((((((((...........-........(((((.......)))))(((.(((.....))).))).))))))....))..))))))) ( -24.10)
>DroAna_CAF1 67418 75 + 1
AAGGAAGCCA--------ACCC----------UCCCAACAAACA-CAACUUGGCUCGCUGGAAUUCCUAAUACGCAGG-AAACUGUUUGGCUUUG
...(((((((--------(...----------..((((......-....))))......((....))......((((.-...)))))))))))). ( -17.90)
>consensus
AAGGAAGCCGCUGCCAGAAGCACACAAA_AAACACCAGCGAACACCAACUUUGCGUACUGGAAUUUCUAAUACGCUGGCAAACUGCUUGGCUUUC
..((((((((((......)))...............................(((((.(((.....))).))))).............))))))) (-11.95 = -14.40 +   2.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:33 2006