| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,851,976 – 17,852,080 |
| Length | 104 |
| Max. P | 0.574478 |
| Location | 17,851,976 – 17,852,080 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 90.38 |
| Mean single sequence MFE | -35.80 |
| Consensus MFE | -32.00 |
| Energy contribution | -32.58 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.574478 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17851976 104 + 22407834 ---GGCAGGCGGCGCUUUGUGACAUCGUUUGCAUGCCGAACAUGAAUUUCAAAGAUUUCGCCGCCGCAGCUGACACUCGUUAGCAGCUAAA---GACGACCUUGAUAGGG-- ---(((.((((((((((((...(((.(((((.....)))))))).....)))))....)))))))...((((((....)))))).)))...---.....(((....))).-- ( -35.50) >DroSec_CAF1 65953 104 + 1 ---GGCAGGCGGCGCUUUGUGACAUCGUUAUCAUGCCCAACAUGAAUUUCAAAGAUUUCGCCGCCGCAGCUGACACUCGUUAGCAGCUAAA---GACGGCCUUGAUAAGG-- ---(((.((((((((((((((((...))))(((((.....)))))....)))))....)))))))((.((((((....)))))).))....---....))).........-- ( -36.20) >DroSim_CAF1 63734 104 + 1 ---GGCAGGCGGCGCUUUGUGACAUCGUUUGCAUGCCGAACAUGAAUUUCAAAGAUUUCGCCGCCGCAGCUGACACUCGUUAGCAGCUAAA---GACGGCCUUGAUAGGG-- ---(((.((((((((((((...(((.(((((.....)))))))).....)))))....)))))))((.((((((....)))))).))....---....))).........-- ( -37.00) >DroEre_CAF1 61564 107 + 1 GCAGGCAGGCGACGCUUUGUGACAUCGUUUGCAUGCCGAACAUGAAUUUCAAAGAUUCCGCCGCCGCAGCUGACACUCGUUAGCAGCUAAA---GACGGCCUUCAUAAGG-- ((.(((.((((...(((((...(((.(((((.....)))))))).....)))))....))))))))).((((((....)))))).(((...---...)))..........-- ( -31.50) >DroYak_CAF1 63045 104 + 1 ---GGCAGGCGGCGCUUUGUGACAUCGUUUGCAUGCCGAACAUGAAUUUCAAAGAUUUCGCCGCCGCAGCUGACACUCGUUAGCAGCUAAA---GAUGGCCUUCAUAAGG-- ---(((.((((((((((((...(((.(((((.....)))))))).....)))))....)))))))((.((((((....)))))).))....---....))).........-- ( -37.00) >DroAna_CAF1 66609 109 + 1 ---GGCAGCCGGCGCUUUGUGACGUCGUUUGCAUGUCGAACAUGAAUCUCAAAGAUUCUGCCACCGCAGCUGACACUCGUUAGCGGCUCAGUCCGGCGGCCUUGACGAGGUC ---.((((.((((((.....).))))).)))).((((((....(((((.....))))).(((.(((..((((((....))))))(((...)))))).))).))))))..... ( -37.60) >consensus ___GGCAGGCGGCGCUUUGUGACAUCGUUUGCAUGCCGAACAUGAAUUUCAAAGAUUUCGCCGCCGCAGCUGACACUCGUUAGCAGCUAAA___GACGGCCUUGAUAAGG__ ...(((.((((((((((((.(((((.(((((.....))))))))..)).)))))....)))))))((.((((((....)))))).))...........)))........... (-32.00 = -32.58 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:32 2006