Locus 6372

Sequence ID 2L_DroMel_CAF1
Location 17,832,935 – 17,833,029
Length 94
Max. P 0.500000
window10178

overview

Window 8

Location 17,832,935 – 17,833,029
Length 94
Sequences 4
Columns 94
Reading direction forward
Mean pairwise identity 82.35
Mean single sequence MFE -17.20
Consensus MFE -11.75
Energy contribution -11.62
Covariance contribution -0.12
Combinations/Pair 1.14
Mean z-score -1.51
Structure conservation index 0.68
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17832935 94 + 22407834
AGAAUUAAUUUGUCAGCAAUUUGCGCAGCCAGACAAAAGUGCCAAAACGUUGCCAGUGGCAACAGUCAACCAAAAUAAAAGAAAAGAAAAAGUA
....(((.((((...((.....)).......(((....((......))((((((...)))))).)))...)))).)))................ ( -14.90)
>DroEre_CAF1 42946 91 + 1
AAAAUUAAUUUGUCAGCAAUUUGCGCAGCCAGACAAAAGUGCCGAAACGUUGCCAGUGGCAACAGUCAGUCGAAAGAAAAG---CGAACAAGAA
........((((((.((.....))((.....(((....((......))((((((...)))))).)))..((....))...)---)).))))).. ( -21.20)
>DroYak_CAF1 43610 91 + 1
AAAAUUAAUUUGUCUGCAAUUUGCGCAGCCAGACAAAAGUGCCAAAACGUUGCCAGUGGCAACAGUCAACAAAAAUAGAAG---CGAACAAGAA
........(((((.(((..((((.(((............)))))))..((((((...)))))).................)---)).))))).. ( -18.00)
>DroAna_CAF1 47844 94 + 1
AGAAUUAAUUUGCCAGCAAUUUGCGUAGCAAGAUAAAAGUGCCAAACCGUUGCCAGCGGCAGCAACCGACGAAAAAAAGAUGAAAUAAUAAAAA
....(((.(((((..((.....))...))))).)))............((((((...))))))............................... ( -14.70)
>consensus
AAAAUUAAUUUGUCAGCAAUUUGCGCAGCCAGACAAAAGUGCCAAAACGUUGCCAGUGGCAACAGUCAACCAAAAUAAAAG___AGAACAAGAA
........((((((.((..........))..))))))...........((((((...))))))............................... (-11.75 = -11.62 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:28 2006