| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,830,566 – 17,830,656 |
| Length | 90 |
| Max. P | 0.884259 |
| Location | 17,830,566 – 17,830,656 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 80.26 |
| Mean single sequence MFE | -25.67 |
| Consensus MFE | -19.49 |
| Energy contribution | -19.72 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.884259 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17830566 90 + 22407834 -------GUCGGACAGACAGCUAAAGUGACAUCAAUCAGGGCGUCCGACCACGCCCCUAAUGUGUUCACAGCACACACUCAAGCACUCACGCA------------------CACG -------(((.....))).(((..((((..........((((((......))))))....(((((.....)))))))))..))).........------------------.... ( -25.90) >DroPse_CAF1 120432 114 + 1 UCCUGCUGCUGGGCUGACAGUUAAAGUGACAUCAAUCAAUGCGGCAUGCCACGCCCCUAAUGCGUUCACA-CACAUAUUCAGCCACUCAUACGCGCACAGAUACUCGUGCACACA ....((((...((((((........((((.............((....))((((.......)))))))).-.......))))))...))...))((((........))))..... ( -24.99) >DroSec_CAF1 44490 100 + 1 -------GUCGGACAGACAGCUAAAGUGACAUCAAUCAGGGCGUCCGACCACGCCCCUAAUGUGUUCACAGCACACACUCAAGCACUCACGCA----C----ACUCACGCACAUG -------(((.....))).(((..((((..........((((((......))))))....(((((.....)))))))))..)))......((.----.----......))..... ( -27.20) >DroSim_CAF1 41805 90 + 1 -------GUCGGACAGACAGCUAAAGUGACAUCAAUCAGGGCGUCCGACCACGCCCCUAAUGUGUUCACAGCACACACUCAAGCACUCACGCA------------------CACG -------(((.....))).(((..((((..........((((((......))))))....(((((.....)))))))))..))).........------------------.... ( -25.90) >DroEre_CAF1 40504 90 + 1 -------GUUGGACCGACAGCUAAAGUGACAUCAAUCAGGGCGUCCGACCACGCCCCUAAUGUGCUCGCAGCACACACUCAAGCACUCAUGCU------------------CACG -------((.((...((..(((..((((..........((((((......))))))....(((((.....)))))))))..)))..))...))------------------.)). ( -26.60) >DroYak_CAF1 41088 90 + 1 -------GUUGAACAGACAGCUAAAGUGACAUCAAUCAGGGCGUCCGACCACGCCCCUAAUGUGUUCACAGCACACACUCAAGCACUCACGCU------------------CACG -------(((.....))).(((..((((..........((((((......))))))....(((((.....)))))))))..))).........------------------.... ( -23.40) >consensus _______GUCGGACAGACAGCUAAAGUGACAUCAAUCAGGGCGUCCGACCACGCCCCUAAUGUGUUCACAGCACACACUCAAGCACUCACGCA__________________CACG .......(((.....))).(((..((((..........(((((........)))))....(((((.....)))))))))..)))............................... (-19.49 = -19.72 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:27 2006