Locus 6370

Sequence ID 2L_DroMel_CAF1
Location 17,822,443 – 17,822,533
Length 90
Max. P 0.500000
window10176

overview

Window 6

Location 17,822,443 – 17,822,533
Length 90
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 79.85
Mean single sequence MFE -33.38
Consensus MFE -20.93
Energy contribution -20.54
Covariance contribution -0.38
Combinations/Pair 1.32
Mean z-score -1.38
Structure conservation index 0.63
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17822443 90 + 22407834
CGGCGUGUUAAUUACAACCCACAUCCGACGAG-G-----------------GGGUGGUU-UUCACUGGGCUGUGAUGACAGGGUUAAUGGUGGA----ACAGCACCAAAAGCC
.((((((.....)))(((((.(((((......-.-----------------)))))(((-.((((......)))).))).)))))..(((((..----....)))))...))) ( -31.00)
>DroSec_CAF1 36394 108 + 1
CGGCGUGUUAAUUACGACCCACAUCCGACGAGUGGUUUGUGGGUGGUUUGUGGGUGGUU-UUCACUGGGCUGUGAUGACAGGGUUAAUGGUGGA----ACAGCACCAAAAGCC
...((((.....))))(((((((.(((.....)))..)))))))(((((...((((.((-((((((.((((.((....)).))))...))))))----).).))))..))))) ( -38.00)
>DroSim_CAF1 32975 91 + 1
CGGCGUGUUAAUUACGACCCACAUCCGACGAGCG-----------------GGGUGGUU-UUCACUGGGCUGUGAUGACAGGGUUAAUGGUGGA----ACAGCACCAAAAGCC
.((((((.....)))(((((.(((((........-----------------)))))(((-.((((......)))).))).)))))..(((((..----....)))))...))) ( -31.70)
>DroEre_CAF1 32559 91 + 1
CGGCGUGUUAAUUACGACCCACAUCCGACUAGCG-----------------GGUUGGUU-UUCAUAGGGCUGUGAUGACAGGGUUAAUGGUGGA----ACAGCACCGAAAGCC
.((((((.....)))(((((.((((((.....))-----------------)).))(((-.(((((....))))).))).)))))..(((((..----....)))))...))) ( -28.50)
>DroYak_CAF1 33119 91 + 1
CGGCGUGUUAAUUACGACCCACAUCCGACGAGCG-----------------GGAUGGCU-UUCACUAGGCUGUGAUGACAGGGUUAAUGGUGGA----ACAGCGCCGAAAGCC
(((((((((.((((.(((((.(((((........-----------------)))))...-.((((......)))).....)))))..))))..)----))).)))))...... ( -31.10)
>DroAna_CAF1 37631 94 + 1
UGGCGUGUUAAUUACGACCUACAUCCGCCACG-G-----------------GGAUGGUCGGUCAAAGGGUGGAGGUGGU-GGUCUGGUGGUGGCCACCCCCAUACCGAAAGCC
.((((((.....)))((((..(((((.(....-)-----------------)))))...))))....((((..((.(((-((((.......)))))))))..))))....))) ( -40.00)
>consensus
CGGCGUGUUAAUUACGACCCACAUCCGACGAGCG_________________GGGUGGUU_UUCACUGGGCUGUGAUGACAGGGUUAAUGGUGGA____ACAGCACCAAAAGCC
.((((((.....)))(((((.(((((.........................))))).....((((......)))).....)))))..(((((..........)))))...))) (-20.93 = -20.54 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:26 2006