| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,899,009 – 1,899,108 |
| Length | 99 |
| Max. P | 0.710158 |
| Location | 1,899,009 – 1,899,108 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 80.00 |
| Mean single sequence MFE | -22.37 |
| Consensus MFE | -17.38 |
| Energy contribution | -18.38 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.710158 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1899009 99 + 22407834 CGAGCUGCAAUUAAAAAAAUU--ACCCAGUGGUCUGGGCCUCCCCCAGGUGUC--CCCACAUCAAAACCCACGACAAGGAGCAGCACUAAAGACCGAAAAAAA----- ...(((((((((.....))))--.((..((((.(((((.....)))))(((..--..)))........)))).....)).)))))..................----- ( -23.40) >DroEre_CAF1 63954 100 + 1 AGCGCUGCACUUAAAAAAAUUAUACCCAGUGGUCUGGGCCUCCCCCAGGUGUC--CCCACAUCGACUCCCACGACAAGGAGCAGCACUAAGCACCGAAAAAA------ ((.(((((....................((((((((((.....))))))....--.))))......(((........)))))))).))..............------ ( -24.90) >DroYak_CAF1 73243 96 + 1 -GCGCUGCACUUAGAAAAAUU--ACCCAGUGGUCUGGCCCAUUCCCAGGUGUCGCCCCACAUCGACUCCCACGACAAGGAGCA---------ACCGAAAAAAACAACA -..(((.(.............--.....((((..((((((.......)).))))..)))).(((.......)))...).))).---------................ ( -18.80) >consensus _GCGCUGCACUUAAAAAAAUU__ACCCAGUGGUCUGGGCCUCCCCCAGGUGUC__CCCACAUCGACUCCCACGACAAGGAGCAGCACUAA__ACCGAAAAAAA_____ ...(((((....................((((((((((.....)))))).......))))........((.......)).)))))....................... (-17.38 = -18.38 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:35 2006