| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,815,546 – 17,815,641 |
| Length | 95 |
| Max. P | 0.997939 |
| Location | 17,815,546 – 17,815,641 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 90.88 |
| Mean single sequence MFE | -22.27 |
| Consensus MFE | -19.75 |
| Energy contribution | -19.83 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.20 |
| Mean z-score | -3.08 |
| Structure conservation index | 0.89 |
| SVM decision value | 2.97 |
| SVM RNA-class probability | 0.997939 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17815546 95 + 22407834 AUCUAGUUAAACAAACGCCCUCAAAGUUAUGCCGCAAAUAAAUAAAUUACAUGUUUUAAUUUGCUAAUUAGUUUUCAGGGCAAAUCGUUUGACAA .....(((((((....(((((.(((..((....(((((((((((.......)))))..))))))....))..))).))))).....))))))).. ( -22.00) >DroSec_CAF1 34726 95 + 1 AUCUAGUUAAACAAACGCCCUCAAAGUUAUGCCGCAAAUAAAUAAAUUACAAGUUUUAAUUUGCUAAUUAGUUUUCAGGGCGAAACGUUUGACAA .....(((((((...((((((.(((..((....((((((....((((.....))))..))))))....))..))).))))))....))))))).. ( -24.30) >DroSim_CAF1 31243 95 + 1 AUCUAGUUAAACAAACGCCUUCAAAGUUAUGCCGCAAAUAAAUAAAUUACAAGUUUUAAUUUGCUAAUUAGUUUUCAGGGCGAAUCGUUUGACAA .....(((((((...((((((.(((..((....((((((....((((.....))))..))))))....))..))).))))))....))))))).. ( -21.60) >DroEre_CAF1 30828 95 + 1 AUCUAGUUAAACAAACGCCCUCAAAGUUGUGCCGCAAAUAAAUAAAUUACUAGUUUUAAUUUGCUAAUUAGUUUUCAGGGUGAAUCGUUUGACAU .....(((((((...((((((.(((..((....((((((....((((.....))))..))))))....))..))).))))))....))))))).. ( -22.10) >DroYak_CAF1 31355 95 + 1 AUCUAGUUAAACAAGCGCCCUCAAAGCUAUGCCGCAAAUAAAUAAAUUACAAAUUUUAAUUUGCUAAUUAGUUUUCAGGGUGACUCGUUUGACAU .....(((((((.((((((((.(((((((....((((((...((((........))))))))))....))))))).)))))).)).))))))).. ( -30.70) >DroAna_CAF1 35845 92 + 1 GUCUAGUUAUAUAAACGCCUUCAAAGUUG-GCCGCAAAUAAAUAAAUUACAAGUUUUAAUUUACUAAUUAGUUUUCCGACCGG--CGCUUGACAA (((.(((.........(((.........)-)).((........((((((..(((........)))...))))))........)--)))).))).. ( -12.89) >consensus AUCUAGUUAAACAAACGCCCUCAAAGUUAUGCCGCAAAUAAAUAAAUUACAAGUUUUAAUUUGCUAAUUAGUUUUCAGGGCGAAUCGUUUGACAA .....(((((((...((((((.(((((((....((((((....((((.....))))..))))))....))))))).))))))....))))))).. (-19.75 = -19.83 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:25 2006