Locus 6368

Sequence ID 2L_DroMel_CAF1
Location 17,795,852 – 17,795,957
Length 105
Max. P 0.667896
window10174

overview

Window 4

Location 17,795,852 – 17,795,957
Length 105
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.25
Mean single sequence MFE -21.72
Consensus MFE -16.25
Energy contribution -16.20
Covariance contribution -0.05
Combinations/Pair 1.10
Mean z-score -1.08
Structure conservation index 0.75
SVM decision value 0.28
SVM RNA-class probability 0.667896
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17795852 105 + 22407834
------------AUUC---AAUUCGAUUCAUUCGAGGCAAUCGCCACACAAUCAAAGUCAAAAUCAAACGCUAAGCCAAACAGUGUUUGCAUAGUAAUGGUGAUUGAAUUAUGUUCCAGA
------------....---...((((.....))))(((....)))...((((((..((.(..((((((((((.........)))))))).))..).))..)))))).............. ( -21.30)
>DroPse_CAF1 89687 120 + 1
CUCUUUCUCUCUUUUUGGACACUUGAUUCAUUCAAGGCAAUUGCCGCACAAUCAAAGUCCGAAUCAAACGCUAAACCAGACUCUGUUUGCAUAGUAAUGGUGAUUGAAUUAUGUUUCAGA
.............(((((((..((((((.......(((....)))....)))))).)))))))((((.(((((......(((.((....)).)))..))))).))))............. ( -24.00)
>DroEre_CAF1 11914 105 + 1
------------AUUC---AAUUCGAUUCAUUCGAGGCAAUUGCCACACAAUCAAAGUCGAAAUCAAACGCUAAGCCAAACUGUGUUUGCAUAGUAAUGGUGAUUGAAUUAUGUUCCAGA
------------....---...((((.....))))(((....)))...(((((..((.((........))))..((((.((((((....))))))..))))))))).............. ( -23.20)
>DroYak_CAF1 11974 81 + 1
------------AUUC---AAUUCGAUUCAUUCGAGGCAAUUGCCACA------------------------AAGCCAAACUGUGUUUGCAUAGUAAUGGUGAUUGAAUUAUGUUCCAGA
------------....---.....((((((.((..(((....)))...------------------------..((((.((((((....))))))..)))))).)))))).......... ( -21.30)
>DroAna_CAF1 9463 109 + 1
-------GCCCAAUUU---AGUUCG-UUCGUUCAAGGCAAUCGCCACACAAUCAAAGUCGAAAUCAAACGCUAAACCAAACUCUGUUUGCAUAGUAAUGGUGAUUGAAUUAUGUUUCAGA
-------....(((.(---(((((.-...((.....))((((((((.....((......))........((((...(((((...)))))..))))..)))))))))))))).)))..... ( -16.50)
>DroPer_CAF1 88065 114 + 1
------UUCCCCUUUUGGACACUUGAUUCAUUCAAGGCAAUUGCCGCACAAUCAAAGUCCGAAUCAAACGCUAAACCAGACUCUGUUUGCAUAGUAAUGGUGAUUGAAUUAUGUUUCAGA
------.......(((((((..((((((.......(((....)))....)))))).)))))))((((.(((((......(((.((....)).)))..))))).))))............. ( -24.00)
>consensus
____________AUUC___AAUUCGAUUCAUUCAAGGCAAUUGCCACACAAUCAAAGUCCAAAUCAAACGCUAAACCAAACUCUGUUUGCAUAGUAAUGGUGAUUGAAUUAUGUUCCAGA
........................((((((.((..(((....))).............................((((.(((.((....)).)))..)))))).)))))).......... (-16.25 = -16.20 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:24 2006