Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 17,794,682 – 17,794,802 |
Length | 120 |
Max. P | 0.519055 |
Location | 17,794,682 – 17,794,802 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.39 |
Mean single sequence MFE | -46.39 |
Consensus MFE | -31.55 |
Energy contribution | -29.06 |
Covariance contribution | -2.49 |
Combinations/Pair | 1.66 |
Mean z-score | -1.05 |
Structure conservation index | 0.68 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.519055 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17794682 120 - 22407834 AUAAAUGAGUGCUUGCAUGAAGGUAAAGGGAAGUGUGGCUCCAAUUCCUGUACCUCCAAAGUUGAGUUGGGCAAAAAACCCUAUACGGUUAGUGUAAAUCGCACUGCUUUGGUGGGCGUU ..........(((..(....(((((..(((((...((....)).))))).))))).((((((...((.(((.......)))...))....(((((.....))))))))))))..)))... ( -33.20) >DroPse_CAF1 88551 120 - 1 AUCAACGAGUGCCUGCACGAGGGCAGGGGCAAGUGCGGCUCCGGCUCGUGCUCCUCGAGGGUGGAGCUGGGCAAGAGGCCCUACACGGUGAGCGUGAACCGCACGGCCCUCGUGGGCGUC ....((((((((((......)))).(((((.......))))).))))))((.((.(((((((.(.((.((((.....))))..((((.....))))....)).).))))))).))))... ( -57.90) >DroEre_CAF1 10745 120 - 1 AUAAAUGAAUGCUUGCACGAGGGUAAAGGAAAGUGUGGCUCCAGCUCCUGCACCUCCAAAGUGGAGUUGGGCAAAAAACCCUAUACGGUUAGUGUGAACCGCACGGCCUUGGUGGGUGUG ........(((((..(.((((((((.(((........((.((((((((.((.........)))))))))))).......))).))).....(((((...)))))..))))))..))))). ( -39.96) >DroWil_CAF1 10855 120 - 1 AUCAACGAAUGCCUACAGGAGGGAAAAGGUAAAUGCGGUUUGAGCUCUUGCACUUCUCGCAGUGAAUUGGGCAAACGUCCAUACACGGUGAGUGUGAAUCGCACCGCUCUGGUGGGUGUU .......(((((((((.((((((..........((((((((..((....))((..(((((.(((...(((((....)))))..))).))))).)))))))))))).)))).))))))))) ( -43.20) >DroAna_CAF1 8260 120 - 1 AUCAACGAGUGUCUGCACGAGGGCCGCGGCAAGUGCGGAUCCGGAUCGUGCACUUCGCGAGUGGAGCUGGGCAAGAAGCCGUACACAGUCAGUGUGAACCGGACCGCCCUGGUGGGCGUU ...........(((((((....((....))..)))))))(((((.(((..(.(((((....)))))...(((.....)))...........)..))).))))).(((((....))))).. ( -46.10) >DroPer_CAF1 86943 120 - 1 AUCAACGAGUGCCUGCACGAGGGCAGGGGCAAGUGCGGCUCCGGCUCGUGCUCCUCGAGGGUGGAGCUGGGCAAGAAGCCCUACACGGUGAGCGUGAACCGCACGGCCCUCGUGGGCGUC ....((((((((((......)))).(((((.......))))).))))))((.((.(((((((.(.((.((((.....))))..((((.....))))....)).).))))))).))))... ( -58.00) >consensus AUCAACGAGUGCCUGCACGAGGGCAAAGGCAAGUGCGGCUCCAGCUCGUGCACCUCGAGAGUGGAGCUGGGCAAAAAGCCCUACACGGUGAGUGUGAACCGCACGGCCCUGGUGGGCGUU ..........((((((...(((((........((((((.((((((((................))))))))............((((.....))))..)))))).))))).))))))... (-31.55 = -29.06 + -2.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:23 2006