Locus 6366

Sequence ID 2L_DroMel_CAF1
Location 17,791,880 – 17,791,974
Length 94
Max. P 0.902955
window10172

overview

Window 2

Location 17,791,880 – 17,791,974
Length 94
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 75.12
Mean single sequence MFE -19.87
Consensus MFE -9.94
Energy contribution -10.77
Covariance contribution 0.84
Combinations/Pair 1.24
Mean z-score -2.08
Structure conservation index 0.50
SVM decision value 1.03
SVM RNA-class probability 0.902955
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17791880 94 + 22407834
AUUUCCGACCAACCCACCAGCCGGGUAGAUGGGAAAAUUUCCAUGUGCAAACACUCGGAAAAUA---CACAUUUUUUCAAACAAUAUAGUCGAAGCG
.....((((..((((.......))))...((..(((((((((..(((....)))..))))....---...)))))..)).........))))..... ( -19.71)
>DroSec_CAF1 7675 94 + 1
AUUUCCUACCAACCCGCCAGUCGGGAAAAUGGGAAAAUUUCCAUGUGCAAACACUCGGAAAAUA---CACAUUUUUUCAAACAAUAUAGUCGAACCG
.(((((((....((((.....))))....))))))).(((((..(((....)))..)))))...---.............................. ( -19.20)
>DroSim_CAF1 7686 94 + 1
AUUUCCUACCAACCCGCCAGUCGGGAAAAUGGGAAAAUUUCCAUGUGCAAACACUCGGAAAAUA---CACAUUUUUUCAAACAAUAUAGUCGAACCG
.(((((((....((((.....))))....))))))).(((((..(((....)))..)))))...---.............................. ( -19.20)
>DroEre_CAF1 7505 92 + 1
AUUUCCAGCCAUAC--CCAGCCGGAAAAAUGUGAAAAUUUCCAUGUGUAAACACUCGGAAAAUA---CACAUUUUUUCGAGCAAUAUAGUCGAACCG
..............--...((((((((((((((....(((((..(((....)))..)))))...---)))))))))))).))............... ( -25.00)
>DroYak_CAF1 7949 92 + 1
AUUUCCAACCAUCC--CCAGCCGGGAAAAUGUGAAAAUUUCCAUGUGCAAACACUCGGAAAAUA---CACAUUUUUUCGAACAAUAUAGUCGAACCG
..............--.....((..((((((((....(((((..(((....)))..)))))...---))))))))..)).................. ( -20.60)
>DroAna_CAF1 6044 82 + 1
AUUCUGGGCUAUG------------CAAAUGUAUACGUUUCUACAUGGGGACACUGACAAAAAGGGUCAUCCUUCUCUGAAAAGAAUGCUCUAU---
.....((((((((------------(....))))).((..((....))..))..((((.......))))......(((....)))..))))...--- ( -15.50)
>consensus
AUUUCCAACCAACC__CCAGCCGGGAAAAUGGGAAAAUUUCCAUGUGCAAACACUCGGAAAAUA___CACAUUUUUUCAAACAAUAUAGUCGAACCG
......................(((((((((......(((((..(((....)))..)))))........)))))))))................... ( -9.94 = -10.77 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:21 2006