| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,790,225 – 17,790,316 |
| Length | 91 |
| Max. P | 0.889138 |
| Location | 17,790,225 – 17,790,316 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 73.98 |
| Mean single sequence MFE | -24.92 |
| Consensus MFE | -9.37 |
| Energy contribution | -10.57 |
| Covariance contribution | 1.19 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.38 |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.889138 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17790225 91 - 22407834 --CCACUGAGUCGCUAAGCGGCUCGCCGAAUUUUUCCCCAUUCAUGUGUGACAA-UUAAGCGGCUUAAGCAGCAACAUUUUUGCUUGGCCUCCA --.(((.(((((((...)))))))...((((........))))....)))....-......((((.((((((........)))))))))).... ( -24.70) >DroVir_CAF1 10342 77 - 1 GUCUC----CUCGCUAAGCUGCUG----CAAUUU--GGCAUGCAUGUGUGUCAGUUUAAGCGGCUUAAGCCGCAUCCGCAUUG-----UCCC-- .....----...(((((((((((.----....((--((((((....))))))))....)))))))).))).((....))....-----....-- ( -24.10) >DroSec_CAF1 5960 89 - 1 --CCACUGAGUCGCUAAGCGGCUCGCCGAAUUUU--CCCAUUCAUGUGUGACAA-UUAAGCGGCUUAAGCAGCAACAUUUUUGCUUGGCCCCCA --.....(((((((...)))))))((..((((.(--(.(((....))).)).))-))..))((((.((((((........)))))))))).... ( -27.40) >DroSim_CAF1 5990 89 - 1 --CCACUGAGUCGCUAAGCGGCUCGCCGAAUUUU--CCCAUUCAUGUGUGACAA-UUAAGCGGCUUAAGCAGCAACAUUUUUGCUUGGGCCCCA --.....(((((((...)))))))((..((((.(--(.(((....))).)).))-))..))(((((((((((........)))))))))))... ( -31.70) >DroEre_CAF1 5822 81 - 1 --CCC-CGAGUCGCUAAGCGGCUCGCCUUAUUUU--CCCAUUCAUGUGUGACAA-UUAAGCAGCUUAAGCUGCAACAUUUUUGC-------CCC --...-((((((((...))))))))........(--(.(((....))).))...-....(((((....)))))...........-------... ( -21.50) >DroAna_CAF1 4543 82 - 1 --CUACCGCCCCUCUAAGCUGCCCCAAAGAAUGC--CCCAUUCAUGUGUGACAA-UUAAGCGGCUUAAGCGGCAACAAGCUU-------CCCCC --.....(((.((.((((((((......(((((.--..))))).((.....)).-....)))))))))).))).........-------..... ( -20.10) >consensus __CCACUGAGUCGCUAAGCGGCUCGCCGAAUUUU__CCCAUUCAUGUGUGACAA_UUAAGCGGCUUAAGCAGCAACAUUUUUGC_____CCCCA .......(((((((...)))))))..............(((......))).........((.((....)).))..................... ( -9.37 = -10.57 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:20 2006