Locus 6364

Sequence ID 2L_DroMel_CAF1
Location 17,789,873 – 17,789,977
Length 104
Max. P 0.592990
window10170

overview

Window 0

Location 17,789,873 – 17,789,977
Length 104
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 82.63
Mean single sequence MFE -27.32
Consensus MFE -16.25
Energy contribution -16.48
Covariance contribution 0.23
Combinations/Pair 1.42
Mean z-score -2.29
Structure conservation index 0.59
SVM decision value 0.12
SVM RNA-class probability 0.592990
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17789873 104 - 22407834
AUGCCCAGACAGGGGCAAUUUGUUGGUUUAGCUGACAAAAAGGGAGCAUGGAAAUAUUUGCAUAGUGGCUAAUUAAGCUUGGCAAAAAGUGCAGGAAAGUUUCG
.(((((......))))).(((((..(.....)..)))))...(((((((....)).(((((((....(((((......))))).....)))))))...))))). ( -29.80)
>DroSec_CAF1 5608 104 - 1
AUGCCCAGACAGGGGCAAUUUGUUGGUUUAGCUGGCAAAAAAGGAGCAUGAAAAUAUUUGCAUAGUGGCUAAUUAAGCUUGGCAAAAAGUGCAGGAAAGUUUCG
.(((((......))))).(((((..(.....)..)))))...(((((((....)).(((((((....(((((......))))).....)))))))...))))). ( -30.30)
>DroSim_CAF1 5639 104 - 1
AUGCCCAGACAGGGGCAAUUUGUUGGUUUAGCUGGCAAAAAAGGAGCAUGAAAAUAUUUGCAUAGUGGCUAAUUAAGCUUGGCAAAAAGUGCAGGAAAGUUUCG
.(((((......))))).(((((..(.....)..)))))...(((((((....)).(((((((....(((((......))))).....)))))))...))))). ( -30.30)
>DroEre_CAF1 5475 104 - 1
GUGCCCAGACAGGGGCAAUUUGUUAGUUUAGCUGCGGAAAGAGGAGCAUGAAAAUAUUUGCAUAGUGGCUAAUUAAGCUUGGCAAAAAGUGCAGGAAAGUUUCG
.(((((......))))).............(((.(.......).)))..((((...(((((((....(((((......))))).....)))))))....)))). ( -26.10)
>DroYak_CAF1 5826 103 - 1
AUGCCCAGGCAGGGGCAAUUUGUAAGUUUAGCUACGGAAAAAGGAGCACGAAAAUAUUUGCAUAGUGGCUAAUUAAGCUUGGCAAA-AUUGCAGAAAAGUUUCG
.(((((......))))).............(((.(.......).))).(((((...((((((.....(((((......)))))...-..))))))....))))) ( -25.80)
>DroPer_CAF1 82925 99 - 1
--UUUCAGACAAGGGCAAUUUGUUGGAUUAGCUUAAAAAUAAAUGGGGUGAACAUAUUUU-UUAGCGGCUAAUUAAUGCCAGAG--AAAUGGCUGAAGCUUUUA
--........((((((.........((((((((((((((...(((.......)))..)))-)))..))))))))...((((...--...))))....)))))). ( -21.60)
>consensus
AUGCCCAGACAGGGGCAAUUUGUUGGUUUAGCUGACAAAAAAGGAGCAUGAAAAUAUUUGCAUAGUGGCUAAUUAAGCUUGGCAAAAAGUGCAGGAAAGUUUCG
.(((((......))))).........................(((((((....)).(((((((....(((((......))))).....)))))))...))))). (-16.25 = -16.48 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:19 2006