| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,780,195 – 17,780,311 |
| Length | 116 |
| Max. P | 0.554388 |
| Location | 17,780,195 – 17,780,311 |
|---|---|
| Length | 116 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 87.54 |
| Mean single sequence MFE | -24.27 |
| Consensus MFE | -18.63 |
| Energy contribution | -17.97 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.554388 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17780195 116 - 22407834 AAGACAACAAUUGUUUAAGAAGCGGCAAAAAGCCGGGAAAGAGGCCAGAAAAAAGCGAUUCUCACGCCCAAAUAGGCCGGCAAAUAAAUAAAAAAAAAUAAGGCUGCUUCCUCAUC .(((((.....)))))..((((((((.....(((((......(((.((((........))))...)))........))))).......((........))..))))))))...... ( -25.64) >DroEre_CAF1 92841 108 - 1 AAGACAACAAUUGUUAGAGGGGCAG-----AGCCGAGAAAGAGGCCAGAAAAAAGCGAUUCUCACGCCGAAAUAGGCCG-CAAAUAAAUAAAA--AACUAAAGCUGCUUCCUCAUC ..((((.....)))).(((((((((-----.(((........))).........(((........(((......)))))-)............--........)))).)))))... ( -25.40) >DroYak_CAF1 82734 113 - 1 AAGACAACAAUUGUUAAAGAAGCGGGAG-AAGCCGGGAAAGAGGCCAGAAAAAAGCGAUUCUCACGCCCAAAUAGGCCGACAAAUAAAUAAAA--AGCCAAAGCUGCUUCCUCAUU ..((((.....))))........(((.(-((((.........((((........(((.......))).......))))...............--(((....)))))))))))... ( -21.76) >consensus AAGACAACAAUUGUUAAAGAAGCGG_A__AAGCCGGGAAAGAGGCCAGAAAAAAGCGAUUCUCACGCCCAAAUAGGCCG_CAAAUAAAUAAAA__AACUAAAGCUGCUUCCUCAUC ..((((.....))))...(((((((......(((........)))....................(((......)))..........................)))))))...... (-18.63 = -17.97 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:18 2006