Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 17,779,053 – 17,779,161 |
Length | 108 |
Max. P | 0.598596 |
Location | 17,779,053 – 17,779,161 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 88.36 |
Mean single sequence MFE | -24.28 |
Consensus MFE | -17.58 |
Energy contribution | -18.54 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.11 |
Mean z-score | -1.74 |
Structure conservation index | 0.72 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.598596 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17779053 108 + 22407834 ---GCUGCUUGUUAGAGAUGUCUAUUUUAAUUAUUAACAAAUUGUACGUUGAUUAAAAACAUCAUUAAUUAAAUAUGUAUCGGGGCAUAUGCCAACUUGCAGCCACUUCUC---- ---(((((..(((...(((((...(((((((((...((.....))....))))))))))))))....................(((....))))))..)))))........---- ( -24.60) >DroSec_CAF1 79118 108 + 1 ---GUUGCUUGUUAGAGAUGUCUAUUUUAAUUAUUAACAAAUUGUACAUUGAUUAAAAACAUCAUUAAUUAAAUAUGUAUCGGGGCAUAUGCCAACUUGCAGCUACUUCUC---- ---(((((..(((...(((((...(((((((((...((.....))....))))))))))))))....................(((....))))))..)))))........---- ( -22.60) >DroEre_CAF1 90447 108 + 1 ---GCGGGCUGUUAGAGAUGUCUAUUUUAAUUAUUAACAAAUUGUGCGUUGAUUAAAAACAUCAUUAAUUAAAUAUGUAUCGGGGCAUAUGCCAACUUGCAGCCACUUCUC---- ---...((((((.((.(((((...(((((((((...((.....))....))))))))))))))....................(((....)))..)).)))))).......---- ( -27.00) >DroYak_CAF1 81465 108 + 1 ---GCUGCUUGUUAGAGAUGUCUAUUUUAAUUAUUAACAAAUUGUGCGCUGAUUAAAAACAUCAUUAAUUAAAUAUGUAUCGGGGCAUAUGCCAACUUGCAGCCACUUCUC---- ---(((((..(((...(((((...(((((((((...((.....))....))))))))))))))....................(((....))))))..)))))........---- ( -25.00) >DroAna_CAF1 88237 115 + 1 CCGACUGCUUGUUAGUCCUGUCUAUUUUAAUAACUAACAAAUUGUGCGUUGAUGAAAAACAUCAUUAAUUAAAUAUGGAACGCAGCAUAUGCCCGCUGGCAGUAAGUUCUCGUUC .(((..((((((((((..(((........)))))))))....(((((((((((((......))))))))......((.....)))))))((((....))))..))))..)))... ( -22.20) >consensus ___GCUGCUUGUUAGAGAUGUCUAUUUUAAUUAUUAACAAAUUGUGCGUUGAUUAAAAACAUCAUUAAUUAAAUAUGUAUCGGGGCAUAUGCCAACUUGCAGCCACUUCUC____ ...(((((..(((...(((((...(((((((((...((.....))....))))))))))))))....................(((....))))))..)))))............ (-17.58 = -18.54 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:17 2006