| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,772,364 – 17,772,481 |
| Length | 117 |
| Max. P | 0.953417 |
| Location | 17,772,364 – 17,772,481 |
|---|---|
| Length | 117 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 68.12 |
| Mean single sequence MFE | -30.35 |
| Consensus MFE | -21.10 |
| Energy contribution | -21.72 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.70 |
| SVM decision value | 1.43 |
| SVM RNA-class probability | 0.953417 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17772364 117 - 22407834 CACUCAGUGCGUGGGAGGCAGCUCGAAAGGGGCGUGGCAAGGCCCCUUAGCUACACGGAAAA-CAAUACGAAACACCUACGCAAUAUGAUAUAUAUGU-AUGAAAUCAAAUAACAUCAA ...(((.((((((((..(.((((...(((((((.(....).))))))))))).).((.....-.....)).....))))))))...))).........-.................... ( -33.30) >DroSec_CAF1 72259 118 - 1 CACUCAGUGCGUGGGAGGCAGCUCGAAAGGGGCGUGGCAAGGCCCCUUAGCUACACAGGAAA-AAAUACGAAACACCUACGCAAUUUGGCAUAUAUGAGAGGCAAUCGAAUAACAUCAA ..((((.((((((((..(.((((...(((((((.(....).))))))))))).)...(....-.....)......))))))))............)))).................... ( -31.72) >DroSim_CAF1 76467 119 - 1 CACUCAGUGCGUGGGAGGCAGCUCGAAAGGGGCGUGGCAAGGCCCCUUAGCUACACAGGAAAAAAAUACGAAACACCUACGCAAUUCGGCAUAUAUGAGAGGCAAUUAAAUAACAUCAA ..(((..((((((((..(.((((...(((((((.(....).))))))))))).)...(..........)......))))))))..(((.......)))))).................. ( -31.80) >DroAna_CAF1 78183 94 - 1 AAUGUAGGGGGAGUGUAGGUGCUU-AGGGGGGCGUGGCAGGUCCCAAUA-CUACACAGCGAGAAAA-GCUUGGCCCACAGGGCGGAUGAUUAAUAAG---------------------- ..(((((.((((.(((...(((((-....)))))..)))..))))....-)))))...((((....-.))))((((...))))..............---------------------- ( -24.60) >consensus CACUCAGUGCGUGGGAGGCAGCUCGAAAGGGGCGUGGCAAGGCCCCUUAGCUACACAGGAAA_AAAUACGAAACACCUACGCAAUAUGACAUAUAUGA_AGGCAAUCAAAUAACAUCAA .......((((((((.....((((.....))))((((((((....))).))))).....................)))))))).................................... (-21.10 = -21.72 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:16 2006