Locus 6358

Sequence ID 2L_DroMel_CAF1
Location 17,751,996 – 17,752,095
Length 99
Max. P 0.647473
window10159

overview

Window 9

Location 17,751,996 – 17,752,095
Length 99
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 84.15
Mean single sequence MFE -27.13
Consensus MFE -21.09
Energy contribution -22.03
Covariance contribution 0.95
Combinations/Pair 1.08
Mean z-score -1.87
Structure conservation index 0.78
SVM decision value 0.24
SVM RNA-class probability 0.647473
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17751996 99 - 22407834
CAAACUACUGCGGCAUUGAUCACUGAGCUUGGGUUCUGUUUUUAUUUUGGGGUUCCUGAUCCCAGGCCCUAUAAUUACAUUU---------------------AUAGCCGCAACCGCACA
........((((((..........((((....))))(((..((((...((((..((((....))))))))))))..)))...---------------------...))))))........ ( -27.30)
>DroSec_CAF1 51962 99 - 1
CAAACUACUGCGGCAUUGAUCACUGAGCUUGGGUUCUGUUUUUAUUUUGGGGUUCCUGAUCCCAGGCCCUAUAAUUACAUUU---------------------AAAGCCGCAACCGCACA
........((((((.((((.....((((....))))(((..((((...((((..((((....))))))))))))..))).))---------------------)).))))))........ ( -27.80)
>DroSim_CAF1 54965 99 - 1
CAAACUACUGCGGCAUUGAUCACUGAGCUUGGGUUCUGUUUUUAUUUUGGGGUUCCUGAUCCCAGGCCCUAUAAUUACAUUU---------------------AAAGCCGCAACCGCACA
........((((((.((((.....((((....))))(((..((((...((((..((((....))))))))))))..))).))---------------------)).))))))........ ( -27.80)
>DroEre_CAF1 61382 99 - 1
CAAACUACUGCGGCAUUGAUCACUGAGCUUGGGUUCUGUUUUUAUUUUGGGGUUCCUGAUCCCAGACCCUAUAAUUACAUUU---------------------AAAGCCGCAACCGCACA
........((((((.((((.....((((....))))(((..(((((((((((((...)))))))))....))))..))).))---------------------)).))))))........ ( -26.70)
>DroYak_CAF1 54438 99 - 1
CAAACUACUGCGGCGUUGAUCACUGAGCUUGGGUUCUGUUUUUAUUUUGGGGUUCCUGAUCCCAGACCCUAUAAUUACAUUU---------------------AAAGCCGCAACCGCACA
........((((((.((((.....((((....))))(((..(((((((((((((...)))))))))....))))..))).))---------------------)).))))))........ ( -26.70)
>DroAna_CAF1 60383 111 - 1
AAAACUACUGCUGCGUUGAUGAUUG-------GCUCUGUGUUUUGUUUGGG--UUCAGCUCCCAGACCCUGUAAUUAUAUACAAUAAUGCGAUCACAAGCCGCAAAGCCGCAACCGCACC
...........(((((((.....((-------(((.((((....(((((((--.......)))))))..(((.((..(((......)))..)).)))...)))).)))))))).)))).. ( -26.50)
>consensus
CAAACUACUGCGGCAUUGAUCACUGAGCUUGGGUUCUGUUUUUAUUUUGGGGUUCCUGAUCCCAGACCCUAUAAUUACAUUU_____________________AAAGCCGCAACCGCACA
........((((((..........((((....))))(((..(((((((((((((...)))))))))....))))..)))...........................))))))........ (-21.09 = -22.03 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:07 2006