Locus 6357

Sequence ID	2L_DroMel_CAF1
Location	17,750,480 – 17,750,586
Length	106
Max. P	0.547775

overview

Window 8

Location	17,750,480 – 17,750,586
Length	106
Sequences	4
Columns	114
Reading direction	forward
Mean pairwise identity	91.63
Mean single sequence MFE	-23.23
Consensus MFE	-18.17
Energy contribution	-19.43
Covariance contribution	1.25
Combinations/Pair	1.00
Mean z-score	-1.58
Structure conservation index	0.78
SVM decision value	0.03
SVM RNA-class probability	0.547775
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17750480 106 + 22407834
UGA--------AAAGUGUGGAAAAUGGGCGGGAAAACUGGGCGAACAGGGCCAAAAAGGCAGCACAAGCAAAAAGGGGUUGGGCCAGUUUUAAUUUCAAAUUCAAAAAGAAGGC
...--------........(((..((((....((((((((.(.(((...(((.....))).((....))........))).).))))))))...))))..)))........... ( -24.50)
>DroSec_CAF1 50480 105 + 1
UGA--------AAAGUGCGGAAAAUGGGCGGGAAAACUGGGCGAACAGGGCCAAAAAGGCAGCACAAGCAA-AAGGGAUUGGGCCAGUUUUAAUUUCAAAUUCAAAAAGAAGGC
(((--------((.((.((.....)).))...((((((((.(.((....(((.....))).((....))..-......)).).))))))))..)))))................ ( -22.90)
>DroSim_CAF1 53484 105 + 1
UGA--------AAAGUGCGGAAAAUGGGCGGGAAAACGGGGCGAACAGGGCCAAAAAGGCAGCACAAGCAA-AAGGGGUUGGGCCAGUUUUAAUUUCAAAUUCAAAAAGAAGGC
(((--------((.((.((.....)).))...(((((.((.(.(((...(((.....))).((....))..-.....))).).)).)))))..)))))................ ( -21.90)
>DroYak_CAF1 52954 111 + 1
UGAAAACGGGG--AGUGUGGAAAAUGGGCGGGAAAACUAAGCGACCAGGGCCAAAAAGGCAGCACAAGCAG-AAGGGGUUGGGCCAGUUUUAAUUUCAAAUUCAAAAAGAAGGC
((((.....((--(((....(((((.(((((.....))...(((((...(((.....))).((....))..-....))))).))).))))).)))))...)))).......... ( -23.60)
>consensus
UGA________AAAGUGCGGAAAAUGGGCGGGAAAACUGGGCGAACAGGGCCAAAAAGGCAGCACAAGCAA_AAGGGGUUGGGCCAGUUUUAAUUUCAAAUUCAAAAAGAAGGC
...................(((..((((....((((((((.(.(((...(((.....))).((....))........))).).))))))))...))))..)))........... (-18.17 = -19.43 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:06 2006