Locus 6355

Sequence ID 2L_DroMel_CAF1
Location 17,742,971 – 17,743,071
Length 100
Max. P 0.594562
window10155

overview

Window 5

Location 17,742,971 – 17,743,071
Length 100
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 91.81
Mean single sequence MFE -17.55
Consensus MFE -16.80
Energy contribution -16.19
Covariance contribution -0.61
Combinations/Pair 1.21
Mean z-score -0.91
Structure conservation index 0.96
SVM decision value 0.12
SVM RNA-class probability 0.594562
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17742971 100 - 22407834
GUGGUGACGACAAAUGGCAAAAAAA-AAAAAAUGUGGAAACGGAGUGGCGUGUGCGGCAAUACUUGUGACAAAUCUGCAGGAAUACAAA-AAAUGCAGAUGU
...((.((((...............-......(.((....)).)((.((....)).)).....)))).))..(((((((..........-...))))))).. ( -19.22)
>DroSec_CAF1 42777 94 - 1
GUGGUGACGACAAAUGGCAAAA--A-A----AAGUGGAAACGGAGUGGCGUGUGCGGCAAUACUUGUGACAAAUCUGCAGGAAUACAAA-AAAUGCAGAUGU
(((.((.((.((.(((.((...--.-.----..((....))....)).))).)))).)).))).........(((((((..........-...))))))).. ( -18.72)
>DroSim_CAF1 45816 96 - 1
GUGGUGACGACAAAUGGCAAAAAAA-A----AAGUGGAAACGGAGUGGCGUGUGCGGCAAUACUUGUGACAAAUCUGCAGGAAUACAAA-AAAUGCAGAUGU
...((.((((...............-.----...((....))..((.((....)).)).....)))).))..(((((((..........-...))))))).. ( -18.72)
>DroEre_CAF1 52061 92 - 1
GUGGUGACGACAAAUGGCAAAA----A----AAGUGGAAACGGAGUGGCGUGUGCGGCAAUACUUGUGACAAAUCUGUAGG-AUACAAA-AAAUGCAGAUGU
(((.((.((.((.(((.((...----.----..((....))....)).))).)))).)).))).........(((((((..-.......-...))))))).. ( -17.40)
>DroYak_CAF1 45248 95 - 1
GUAGUGACGACAAAUGGCAAAAA-A-A----AAGUGUAAACGGAGUGGCGUGUGCGGCAAUACUUGUGACAAAUCUGUAGGAAUACAAA-AAAUACAGAUGU
...((.((((.............-.-.----..((....))...((.((....)).)).....)))).))..(((((((..........-...))))))).. ( -15.12)
>DroAna_CAF1 51717 98 - 1
GUGGUGACGACAAAUGGCAAAAAAAUA----AAAUGGGAAUGGUGCGGCGUGUACGGCAAUACUUGUGACAAAUCUGCAGGAAAACAAAAAAAUGCAGAUGU
(((.((.(((((..(.(((......(.----.....)......))).)..))).)).)).))).........(((((((..............))))))).. ( -16.14)
>consensus
GUGGUGACGACAAAUGGCAAAAA_A_A____AAGUGGAAACGGAGUGGCGUGUGCGGCAAUACUUGUGACAAAUCUGCAGGAAUACAAA_AAAUGCAGAUGU
...((.((((.......................((....))...((.((....)).)).....)))).))..(((((((..............))))))).. (-16.80 = -16.19 +  -0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:03 2006