Locus 6354

Sequence ID 2L_DroMel_CAF1
Location 17,741,969 – 17,742,078
Length 109
Max. P 0.914714
window10154

overview

Window 4

Location 17,741,969 – 17,742,078
Length 109
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 86.28
Mean single sequence MFE -21.74
Consensus MFE -18.04
Energy contribution -18.27
Covariance contribution 0.22
Combinations/Pair 1.11
Mean z-score -2.63
Structure conservation index 0.83
SVM decision value 1.10
SVM RNA-class probability 0.914714
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17741969 109 - 22407834
CUUGGGACGCUUUAAAACAUUUACACCACGCUCUUAUUGUUUUAGCGGAUUGGAA-ACGCUUUCCAAUUAAUUCCCGUCCCCAUUUGCCCAUUUGCCCAUUUGCCCAUUU
...((((((((..((((((..................))))))))).((((((((-.....)))))))).......)))))............................. ( -21.37)
>DroSec_CAF1 41780 93 - 1
CUUGGGACGCUUUAAAACAUUUACACCACGCUCUUAUUGUUUUAGCGGAUUGGAA-ACGCUUUCCAAUUAAUUCCCGUCCCCAUUUG----------------CCCAUUU
...((((((((..((((((..................))))))))).((((((((-.....)))))))).......)))))......----------------....... ( -21.37)
>DroSim_CAF1 44842 93 - 1
CUUGGGACGCUUUAAAACAUUUACACCACGCUCUUAUUGUUUUAGCGGAUUGGAA-ACGCUUUCCAAUUAAUUCCCGUCCCCAUUUG----------------CCCAUUC
...((((((((..((((((..................))))))))).((((((((-.....)))))))).......)))))......----------------....... ( -21.37)
>DroEre_CAF1 51138 93 - 1
CUUGGGACGCUUUAAAACAUUUACACCACGCUCUUAUUGUUUUAGCGGAUUGGAA-CCGCUUUCCAAUUAAUUCCCGUCCCCAUUUG----------------CCCAUUU
...((((((((..((((((..................))))))))).((((((((-.....)))))))).......)))))......----------------....... ( -21.27)
>DroYak_CAF1 44300 93 - 1
CUUGGGACGCUUUAAAACAUUUACACCACGCUCUUAUUGUUUUAGCGGAUUGGAA-ACGCUUUCCAAUUAAUUCCCGUCCCCAUUUG----------------CCCAUUU
...((((((((..((((((..................))))))))).((((((((-.....)))))))).......)))))......----------------....... ( -21.37)
>DroAna_CAF1 51057 84 - 1
CUUGGGGGGCUU--------CUACAC--CGCUGUUAUUGUUUGGCCCGAUUGGAAAAUGCUUUCCAAUUAAUUCCCGUCCCCGUUCG----------------CCCAUUC
..(((((((((.--------..(((.--.........)))..)))))(((((((((....)))))))))..................----------------))))... ( -23.70)
>consensus
CUUGGGACGCUUUAAAACAUUUACACCACGCUCUUAUUGUUUUAGCGGAUUGGAA_ACGCUUUCCAAUUAAUUCCCGUCCCCAUUUG________________CCCAUUU
...((((((...................((((...........))))((((((((......))))))))......))))))............................. (-18.04 = -18.27 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:02 2006