Locus 6353

Sequence ID 2L_DroMel_CAF1
Location 17,738,516 – 17,738,630
Length 114
Max. P 0.854016
window10153

overview

Window 3

Location 17,738,516 – 17,738,630
Length 114
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 75.99
Mean single sequence MFE -16.14
Consensus MFE -1.40
Energy contribution -1.80
Covariance contribution 0.40
Combinations/Pair 1.47
Mean z-score -1.75
Structure conservation index 0.09
SVM decision value 0.80
SVM RNA-class probability 0.854016
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17738516 114 - 22407834
UACAUGUAUUGGCCAUUAAAAAUCAUUUAAUACCCAUUAUUUGACCGAAGCAUUUCGAGCAGCUCAACUCAUAAUGUGCGUCACGUUAAUGCUCAAAACAAACAGCCCACCAAA
....(((.(((..((((((...(((..((((....))))..)))..((.(((((..(((........)))..)))))...))...))))))..))).))).............. ( -18.70)
>DroSec_CAF1 38405 113 - 1
UACAUAUAUUGGCCAUUAAAAAUCAUUUAAUACCCAUUAUUUGACCAAAGCAUUUCGAACAACUCAACUCCCAAUGUGCGUCAC-UUAAUGCUCAAAACAAACAGCCCACCAAA
..........(((.((((((.....))))))...(((((..((((....(((((..((..........))..)))))..)))).-.))))).............)))....... ( -13.80)
>DroSim_CAF1 41482 113 - 1
UAAAUGUAUUGGCCAUUAAAAAUCAUUUAAUACCCAUUAUUUGACCGAAGCAUUUCGAGCAACUCAACUCGCAAUGUGCGUCAC-UUAAUGCUCAAAACAAACAGCCCACCAAA
....(((.(((..((((((...(((..((((....))))..)))..((.(((((.((((........)))).)))))...))..-))))))..))).))).............. ( -21.40)
>DroYak_CAF1 40775 111 - 1
UACAUUUAUUAAGCAUUACAAAU-AUUAAAUACCCUUUAUUUGACCAAAGAAUUUCGAAUAGCUCAGCUCCCAAUGUUUGUUAC-UUAAUGUUUA-AACAAGCAACCCACCAAA
........(((((((((((((((-(((.........((((((((..........))))))))..........)))))))))...-..))))))))-)................. ( -14.01)
>DroAna_CAF1 47943 105 - 1
GCCAUUUAUUGGCCAUUAAAAAACAUUUAAUAACCAUUAUUUAAUAAAGUUGAUUGGGGAAAUUCAAUAUUCUC--UUUGCCACG--AACAC-CGAAACAAAGAA----AAAAA
((((.....)))).((((((.....))))))..(((....(((((...))))).)))...............((--((((...((--.....-))...)))))).----..... ( -12.80)
>consensus
UACAUGUAUUGGCCAUUAAAAAUCAUUUAAUACCCAUUAUUUGACCAAAGCAUUUCGAGCAACUCAACUCCCAAUGUGCGUCAC_UUAAUGCUCAAAACAAACAGCCCACCAAA
.........((((.((((((.....))))))..................((((...(((........))).....))))))))............................... ( -1.40 =  -1.80 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:01 2006