Locus 6352

Sequence ID 2L_DroMel_CAF1
Location 17,732,892 – 17,732,995
Length 103
Max. P 0.735762
window10152

overview

Window 2

Location 17,732,892 – 17,732,995
Length 103
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 76.10
Mean single sequence MFE -29.14
Consensus MFE -19.08
Energy contribution -21.04
Covariance contribution 1.96
Combinations/Pair 1.13
Mean z-score -1.60
Structure conservation index 0.65
SVM decision value 0.44
SVM RNA-class probability 0.735762
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17732892 103 + 22407834
GCUGCUCAGUUGAUGCCUGAAUGGAUUCUGGGUAGCUGUGGGUUCAAUAUUUGCUUAUUGAGCCUCGCUUCAAAUUACAUUCAGUGCAGUACGAUGUGUUCGA
(((((((((......((.....))...))))))))).((((((((((((......))))))))).)))............((((..((......))..)).)) ( -32.40)
>DroSec_CAF1 32868 89 + 1
GCUGCUCAGUUGAUGCCUGAAUGGAUUCUGGCUAGCUGUGGGUUCAAUAUUUGCUUAUGGAGCCUCGCUUCAAAUGACAUUCAAUA--------------CGA
..((.(((.((((.(((.(((....))).))).....((((((((.(((......))).))))).))).)))).))))).......--------------... ( -20.50)
>DroSim_CAF1 35295 89 + 1
GCUGCUCAGUUGAUGCCUGAAUGGAUUCUGGCUAGCUGUGGGUUCAAUAUUUGCUUAUUGAGCCUCGCUUCAAAGGACAGUCAAUA--------------CGA
((((.((..((((.(((.(((....))).))).....((((((((((((......))))))))).))).))))..)))))).....--------------... ( -28.40)
>DroEre_CAF1 42701 98 + 1
GCUGCUCAGUUGAUGCCUGAAUGGAUUCUGGGUAGCUGUGGGUUCAAUAUUUGCUUAUUGAGCCACGCCUCAACUGACAGUCAAUG-----UGAAGUGGUCAA
(((((((((......((.....))...))))))))).((((((((((((......))))))))).)))......((((..((....-----.))....)))). ( -33.90)
>DroAna_CAF1 42577 94 + 1
ACUGCUCAGUUGAUGGCCGACGGGAUUUGCAGUUGUUGUUGCGUCAAUAUUUGCUUAUUG-------CUUGGACUGGCAGUCAAUA--GGGGGACCUGGUCGA
(((((.(((((.(.(((.((((.(((..((....)).))).))))((((......)))))-------))).))))))))))...((--((....))))..... ( -30.50)
>consensus
GCUGCUCAGUUGAUGCCUGAAUGGAUUCUGGGUAGCUGUGGGUUCAAUAUUUGCUUAUUGAGCCUCGCUUCAAAUGACAGUCAAUA______GA__UG_UCGA
(((((((((......((.....))...))))))))).((((((((((((......))))))))).)))................................... (-19.08 = -21.04 +   1.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:00 2006