Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 17,732,342 – 17,732,446 |
Length | 104 |
Max. P | 0.897612 |
Location | 17,732,342 – 17,732,446 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 87.22 |
Mean single sequence MFE | -24.31 |
Consensus MFE | -17.34 |
Energy contribution | -16.70 |
Covariance contribution | -0.64 |
Combinations/Pair | 1.27 |
Mean z-score | -2.46 |
Structure conservation index | 0.71 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.897612 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17732342 104 - 22407834 GCCUUCACACAUUAUCACAGGCUUUUCCAUUUCUCU------GGAAAAUGUCCUUCGAUUGCCCGGACAAAAGUGCAUGCUACUUCGCAAUACUGAUUAAUCUAUCAAAA ((((..............))))(((((((......)------))))))(((((...........)))))..((((..(((......))).))))(((......))).... ( -18.54) >DroSec_CAF1 32311 110 - 1 GCCUUCACACAUUAUCACAGGCUUUUCCAUUUCUCUGAAAAUGGAAAAUGUCCUUCGAUUGCCCGGACAAAAGUGCAGGUUACUUUACAAUACUGAUUAAUCUAUCAAAA ((((.(((..............((((((((((......))))))))))(((((...........)))))...))).)))).............((((......))))... ( -23.20) >DroSim_CAF1 34746 104 - 1 GCCUUCACACAUUAUCACAGGCUUUUCCAUUUCUCU------GGAAAAUGUCCUUCGAUUGCCCGGACAAAAGUGCAGGCUACUUUACAAUACUGAUUAAUCUAUCAAAA ((((.(((..............(((((((......)------))))))(((((...........)))))...))).)))).............((((......))))... ( -22.90) >DroEre_CAF1 42161 99 - 1 GCCUUCGCACAUU-----AGGCUUUUCCAUUUUCCU------GGAAAAUGUCCCCGGAUUGCCCGGAUAAAAGUGCAGGCUACUUUGCAAUACUGAUUAAUCAGCCAAAA ((((..((((...-----.((((((((((......)------)))))).))).((((.....))))......))))))))............((((....))))...... ( -28.90) >DroYak_CAF1 34563 102 - 1 GCCUUCACACAUUAUCGCAGGGUUUUCCAUUUCUCU------GGAAAAUGUCCUUCGAUU--UCGGACGAAAGUGCAGGCUACUUAACAAUACUGAUUAAUCAGUUAAAA ((((.(((......(((.(((((((((((......)------)))))))..))).)))((--((....))))))).))))...........(((((....)))))..... ( -28.00) >consensus GCCUUCACACAUUAUCACAGGCUUUUCCAUUUCUCU______GGAAAAUGUCCUUCGAUUGCCCGGACAAAAGUGCAGGCUACUUUACAAUACUGAUUAAUCUAUCAAAA ((((.(((..............((((((..............))))))(((((...........)))))...))).)))).............((((......))))... (-17.34 = -16.70 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:59 2006