Locus 6350

Sequence ID 2L_DroMel_CAF1
Location 17,732,108 – 17,732,205
Length 97
Max. P 0.506647
window10150

overview

Window 0

Location 17,732,108 – 17,732,205
Length 97
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 83.22
Mean single sequence MFE -21.48
Consensus MFE -13.27
Energy contribution -12.97
Covariance contribution -0.30
Combinations/Pair 1.29
Mean z-score -2.12
Structure conservation index 0.62
SVM decision value -0.05
SVM RNA-class probability 0.506647
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17732108 97 - 22407834
UGAAAUCUAUA-UGAAAUUAUCACUUGACUGCUGCCU-AUGCCACUUGAACUAAUGCUUAGUAUCUCAAGCGUUUAGCCAAGACAUUCGAGAUUUCAUG
((((((((..(-((................((.....-..))..((((....(((((((........)))))))....)))).)))...)))))))).. ( -19.80)
>DroSec_CAF1 32079 97 - 1
UGAAAUCUAAA-CGAAAUUAUCACUUGAAGGCUCCCU-AAGCCACUUGAACUAAUGCUUAGUAUCUCAAGCGUUUAGCCAAGACAUUCGAGAUUUCAUG
((((((((...-((((.............((((....-.)))).((((....(((((((........)))))))....))))...)))))))))))).. ( -24.50)
>DroSim_CAF1 34513 97 - 1
UGAAAUCUAAA-CGAAAUUAUCACUUGAAGGCUCCCU-AAGCCACUUGAACUAAUGCUUAGUAUCUCAAGCGUUUAGCCAAGACAUUCGAGAUUUCAUG
((((((((...-((((.............((((....-.)))).((((....(((((((........)))))))....))))...)))))))))))).. ( -24.50)
>DroEre_CAF1 41938 97 - 1
UGAAAUC-AUU-CGAAAUUAUCACUUGAAGCCGCCCUCAAACCUCUUGAACUAAUGCUUAGUAUCUCAAGCGUUUAGCCAAGACAUUCGAGAUUUCAUG
(((((((-..(-((((........((((........))))...(((((....(((((((........)))))))....)))))..)))))))))))).. ( -21.50)
>DroYak_CAF1 34340 98 - 1
UGAAAUCUACA-CGAAAUUUCCACUUGAAACCUCCCUAAAACCACUUGAACUAAUGCUUAGUAUCUCAAGCGUUUAGCCAAGACAUUCGAGAUUUCAUG
((((((((...-((((.((((.....))))..............((((....(((((((........)))))))....))))...)))))))))))).. ( -18.90)
>DroAna_CAF1 41782 99 - 1
CGACAUCCUUAGAAAAAUUAUAACUAAAGGACUCGCUCCAGACACUUUAACUGGUGUUUAGUGUUUCAAGCGUUAACCGAAGGAAUUUAGGUUUUCAAG
.((..(((((((...........)).))))).))(((..(((((((..(((....))).)))))))..)))(..((((...........))))..)... ( -19.70)
>consensus
UGAAAUCUAUA_CGAAAUUAUCACUUGAAGGCUCCCU_AAGCCACUUGAACUAAUGCUUAGUAUCUCAAGCGUUUAGCCAAGACAUUCGAGAUUUCAUG
.(((((((....((((....((....))................((((....(((((((........)))))))....))))...)))))))))))... (-13.27 = -12.97 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:58 2006