Locus 635

Sequence ID 2L_DroMel_CAF1
Location 1,882,526 – 1,882,646
Length 120
Max. P 0.610044
window1035

overview

Window 5

Location 1,882,526 – 1,882,646
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 91.67
Mean single sequence MFE -46.17
Consensus MFE -37.73
Energy contribution -37.73
Covariance contribution 0.01
Combinations/Pair 1.10
Mean z-score -2.12
Structure conservation index 0.82
SVM decision value 0.16
SVM RNA-class probability 0.610044
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1882526 120 - 22407834
GAACAAGGAGCGACACUACUGGCUGGACAUCACCGAUCUGGAGAAGGAGGGCGACUUCAGAAUCUCCGCGUCCGGCAAGAGGCCCAACUUCCUCAAGUGGAGAGCGGGCCAGCCCAAUAA
......((.((.......((.((((((((((...)))..(((((..((((....))))....)))))..))))))).)).(((((...((((......))))...))))).))))..... ( -46.00)
>DroSec_CAF1 51688 120 - 1
CAACAAGGAGCGACACUACUGGCUGGACAUCACCGAUCUGGAGAAGGAGGGCGACUUCAGGGUCUCAGCGUCCGGCAAGAGGCCCAACUUCCUCAAGUGGAGAGUGGGCCAGCCCAAUAA
......((.((.......((.(((((((..((......))((((..((((....))))....))))...))))))).)).((((((..((((......))))..)))))).))))..... ( -47.80)
>DroYak_CAF1 51586 120 - 1
AAACAAGGAGCGACACUACUGGCUGGGCAUCACCGAUCUGGCGAGGGAGGGGGACUUCAGGUCCUCAGCCUCAGGCAAGAGGCCCAACUUCUUCAAGUGGAGAGCGGGUCAGCCCAAUAA
.........((..(.(((((.((..(((......).))..))(((((((((((((.....)))))).(((((......)))))....))))))).))))).).))(((....)))..... ( -44.70)
>consensus
AAACAAGGAGCGACACUACUGGCUGGACAUCACCGAUCUGGAGAAGGAGGGCGACUUCAGGAUCUCAGCGUCCGGCAAGAGGCCCAACUUCCUCAAGUGGAGAGCGGGCCAGCCCAAUAA
......((.((.......((.(((((((.((.((.....)).))..((((....))))...........))))))).)).(((((...((((......))))...))))).))))..... (-37.73 = -37.73 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:30 2006