Locus 6348

Sequence ID 2L_DroMel_CAF1
Location 17,728,519 – 17,728,630
Length 111
Max. P 0.736576
window10147

overview

Window 7

Location 17,728,519 – 17,728,630
Length 111
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 97.30
Mean single sequence MFE -22.14
Consensus MFE -20.82
Energy contribution -20.86
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -1.25
Structure conservation index 0.94
SVM decision value 0.44
SVM RNA-class probability 0.736576
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17728519 111 - 22407834
UAAGAAACACACACAGAGAAAUAUAAUGGCGUCCAGGGCAUAAGUAAUGGCGCCCCAUUUGGGCAGUCAAAACAGGAAGAAAAGCCCUUAGAAAACUAAACGACAAAUGGA
...........................((((.(((..((....))..)))))))((((((((((..((..........))...))))((((....)))).....)))))). ( -25.30)
>DroSec_CAF1 28739 111 - 1
UAAGAAACGCACACACAGAAAUAUAAUGGCGUCCAGGGGAUAAGUAAUGGCGCCCCAUUUGGGCAGUCAAAACAGGAAGAAAAGUCCUUAGAAAACUAAACGACAAAUGGA
..........................(((((((((((((....((....)).))))...))))).))))..............(((.((((....))))..)))....... ( -20.60)
>DroSim_CAF1 30097 111 - 1
UAAGAAACGCACACACAGAAAUAUAAUGGCGUCCAGGGGAUAAGUAAUGGCGCCCCAUUUGGGCAGUCAAAACAGGAAGAAAAGCCCUUAGAAAACUAAACGACAAAUGGA
...........................((((.(((............)))))))((((((((((..((..........))...))))((((....)))).....)))))). ( -21.80)
>DroEre_CAF1 38512 111 - 1
UAAGAAGCACACACACAGAAAUAUAAUGGCGUCCAGGGGAUAAGUAAUGGCGCCCCAUUUGGGCAGUCAAAACAGGAAGAAAAGCCCUUAGAAAACUAAACGACAAAUGGA
...........................((((.(((............)))))))((((((((((..((..........))...))))((((....)))).....)))))). ( -21.80)
>DroYak_CAF1 30948 111 - 1
UAAGAAACACACACACAGAAAUAUAAUGGCGUCCAGGGGAUAAGUAAUGGCGCCCCAUUUGGGCAGUCAAAACAGGAAGAAAAGCCUUCAGAAAACUAAACGACAAAUGGA
...........................((((.(((............)))))))(((((((..............((((......))))..............))))))). ( -21.19)
>consensus
UAAGAAACACACACACAGAAAUAUAAUGGCGUCCAGGGGAUAAGUAAUGGCGCCCCAUUUGGGCAGUCAAAACAGGAAGAAAAGCCCUUAGAAAACUAAACGACAAAUGGA
...........................((((.(((..(......)..)))))))((((((((((..((..........))...))).((((....))))....))))))). (-20.82 = -20.86 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:55 2006