Locus 6347

Sequence ID 2L_DroMel_CAF1
Location 17,728,063 – 17,728,167
Length 104
Max. P 0.762072
window10146

overview

Window 6

Location 17,728,063 – 17,728,167
Length 104
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 78.82
Mean single sequence MFE -23.60
Consensus MFE -9.88
Energy contribution -12.44
Covariance contribution 2.56
Combinations/Pair 1.08
Mean z-score -2.13
Structure conservation index 0.42
SVM decision value 0.50
SVM RNA-class probability 0.762072
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17728063 104 - 22407834
AUUUUAUUCUAUGCAUUA--AAAAUUAUUGACUGCCAGUCCGGCAAGUUAAUAAAAAACUAUUUGUGGCGAAAGUACUGAAGCAUAGUACGCGCUGAAAAUGUAUU
..........(((((((.--....((((((((((((.....))).)))))))))............((((...((((((.....)))))).))))...))))))). ( -27.50)
>DroSec_CAF1 28283 104 - 1
AUUUUCUCCUAUGCAUUA--AAAAUUAUUGACUACCAGUGCCGCAAGUUAAUAAAAAACUAUUUGUGGCGAAAGUACUGAAGUAAAGUACGCGCUGGAAAUGUAUU
..........((((((((--(......))))...((((((((((((((............)))))))))....(((((.......)))))..)))))...))))). ( -24.80)
>DroSim_CAF1 29644 104 - 1
AUUUUGUUCUAUGCAUUA--AAAAUUAUUGACUGCCAGUGCCGAAAGUUAAUAAAAAACUAUUUGUGGCGAAAGUACUGAAGUAAAGUACGCGCUGGAAAUGUAUU
..........(((((((.--....(((((((((..(......)..))))))))).........(.(((((...(((((.......))))).))))).)))))))). ( -22.40)
>DroEre_CAF1 38068 100 - 1
AUUUUAUUUGACGCAUUA--AAAAAUAUUCACUGAGAGUCCUGCAAGUUAAUAAAAAACU----GCGGCGAAAGUACUGCAGCACAGGAAGCUCUGAAAAUGUAUU
............(((((.--.......((((..(((..(((((..((((.......))))----(((((....)..))))....)))))..))))))))))))... ( -20.40)
>DroAna_CAF1 37691 104 - 1
AUUAUAUUCGACUCAGUACUAAAGAUAUUGACUCGCAGAACAGCGAGUUAAUAAAAAACUCUGUGCGGC--AAGCGUUGGGGAAAAUUAAAUGCUAAAAAUUUAUU
.......(((.(.(((.........(((((((((((......))))))))))).......))).)))).--.((((((...........))))))........... ( -22.89)
>consensus
AUUUUAUUCUAUGCAUUA__AAAAUUAUUGACUGCCAGUCCCGCAAGUUAAUAAAAAACUAUUUGUGGCGAAAGUACUGAAGCAAAGUACGCGCUGAAAAUGUAUU
..........(((((((........((((((((............))))))))............(((((...(((((.......))))).)))))..))))))). ( -9.88 = -12.44 +   2.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:54 2006