Locus 6345

Sequence ID 2L_DroMel_CAF1
Location 17,726,163 – 17,726,253
Length 90
Max. P 0.962133
window10144

overview

Window 4

Location 17,726,163 – 17,726,253
Length 90
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 85.28
Mean single sequence MFE -25.02
Consensus MFE -21.14
Energy contribution -21.26
Covariance contribution 0.12
Combinations/Pair 1.10
Mean z-score -2.14
Structure conservation index 0.84
SVM decision value 1.54
SVM RNA-class probability 0.962133
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17726163 90 - 22407834
-GACCAAUCACACUUUGCAUAUGCAGCGUUGCGGUAUUCACACCAGCGAUCCUGC----------------CCCCUCUACCAUGGGGCAGCCAUGCCCCUUAGUUA-C
-(((..................((((.((((((((......))).))))).))))----------------............((((((....))))))...))).-. ( -26.00)
>DroSec_CAF1 26394 91 - 1
-GACCAAUCACACUUUGCAUAGGCAGCGUUGCGGUAUUCACACCAGCGAUCCUGC----------------CCCCAUUACCAUGGUGCACCCAUGCCCCUUAGUUAAC
-..............((((..(((((.((((((((......))).))))).))))----------------).((((....))))))))................... ( -22.70)
>DroEre_CAF1 36256 91 - 1
-GACCAAUCACACUUUGCAUAUGCAGCGUUGCGGUAUUCACACCAGCGAUCCUGC----------------CCCCAUCACCACGGGGCACCCAUGCCCCUUAGUUAAC
-(((..................((((.((((((((......))).))))).))))----------------............((((((....))))))...)))... ( -25.30)
>DroYak_CAF1 28670 91 - 1
-GACCAAUCACACUUUGCAUAUGCAGCGUUGCGGUAUUCACACCAGCGAUCCUGC----------------CCCCAUCACCACGGGGCACCCAUGCCCCUUAGUUAAC
-(((..................((((.((((((((......))).))))).))))----------------............((((((....))))))...)))... ( -25.30)
>DroAna_CAF1 35705 107 - 1
CGACCAAUCACACUUUGCAUAUGCAGCGUUGCGGUAUUCACACCAGCGAUCCUGCCAUCCUGCCAUCCUGCCACCUUUUCCACGGGGCAUCC-UGUUCGUUUGUUGCC
((((.(((.(((....(((...((((.((((((((......))).))))).)))).....))).....((((.((........))))))...-)))..))).)))).. ( -25.80)
>consensus
_GACCAAUCACACUUUGCAUAUGCAGCGUUGCGGUAUUCACACCAGCGAUCCUGC________________CCCCAUUACCACGGGGCACCCAUGCCCCUUAGUUAAC
.(((..................((((.((((((((......))).))))).))))............................((((((....))))))...)))... (-21.14 = -21.26 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:52 2006