| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,722,973 – 17,723,073 |
| Length | 100 |
| Max. P | 0.960728 |
| Location | 17,722,973 – 17,723,073 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 79.12 |
| Mean single sequence MFE | -30.85 |
| Consensus MFE | -19.38 |
| Energy contribution | -20.88 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.63 |
| SVM decision value | 1.52 |
| SVM RNA-class probability | 0.960728 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17722973 100 - 22407834 CCUCCGAACCUAACCGCUACCAGCCCC---------UGCCCGCUCCCCACCGCCACAAUCUCCACCUGAUUGGUAUGCAGGGGGGCGUGACUUGACGCCUUUGGCUAUC ...............((((....((((---------(((..((........))..(((((.......)))))....)))))))(((((......)))))..)))).... ( -31.30) >DroSec_CAF1 24573 109 - 1 CCUCCGAUCCCAACCGCUACCAGACCCGCUCCACGCUUCCCGCUCCCCACCACCCCAAUCUCCACCUGAUUGGUAUGCAGGGGGGCGUGACUUGACGCCUUUGGCUAUC .....(((.((((..((..........((.....)).((.((((((((..((..((((((.......))))))..))..)))))))).))......))..))))..))) ( -33.30) >DroSim_CAF1 26620 102 - 1 CCUCCGAUACCAACCGCCACCAGACCCGCUCCACG-------CUCCCCACCACCCCAAUCUCCACCUGAUUGGUAUGCAGGGGGGCGUGACUUGACGCCUUUGGCUAUC .....((((((((..((.....((.....))((((-------((((((..((..((((((.......))))))..))..)))))))))).......))..)))).)))) ( -36.50) >DroYak_CAF1 26916 83 - 1 CCUCCGUUUCCAACCCCUAC---ACCC-----------------------GACUUCAUUCUCCACCUGAUUGGUAUGCAGGGGGGCGUGACUUGACGCCUUUGGCUAUC .........(((((((((.(---(.((-----------------------((..(((.........)))))))..)).)))))(((((......))))).))))..... ( -22.30) >consensus CCUCCGAUCCCAACCGCUACCAGACCC_______________CUCCCCACCACCCCAAUCUCCACCUGAUUGGUAUGCAGGGGGGCGUGACUUGACGCCUUUGGCUAUC ...............((((.........................((((..((..((((((.......))))))..))..))))(((((......)))))..)))).... (-19.38 = -20.88 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:50 2006