| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,716,368 – 17,716,483 |
| Length | 115 |
| Max. P | 0.528755 |
| Location | 17,716,368 – 17,716,483 |
|---|---|
| Length | 115 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 78.79 |
| Mean single sequence MFE | -16.71 |
| Consensus MFE | -11.42 |
| Energy contribution | -11.98 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.68 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.528755 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17716368 115 + 22407834 GCUCUG--UUCGUUCCUUUAAUUUACGUGUAUUUUUUUAAAAACCUUUAAAGUUUUCUAAUAUUUGUGGUAUCAUUUAAAUGAUUUCAGUCCAAAUGGAUGAAAUUUAAAUGUCUUU ......--..............(((((.(((((.(((((((....)))))))......))))).)))))...((((((...(((((((.(((....))))))))))))))))..... ( -14.80) >DroSec_CAF1 18162 95 + 1 GCUCUCUUUUGGUUCCU-UAAUUUACAUGUAUU---------------------UUCUAAUAUAUGUGGUAUCAUUUAAAUCAUUCCAGUCCAAAUGGUUAAAAUUUAAAUGAUUUU .................-....(((((((((((---------------------....))))))))))).(((((((((((....(((.......))).....)))))))))))... ( -18.30) >DroSim_CAF1 20189 96 + 1 GCUCUCUUUUGGUUCCUUUAAUUUACAUGUAUU---------------------UUCUAAUAUAUGUGGUAUCAUUUAAAUCAUUCCAGUCCAAAUGGUUAAAAGUUAAAUGAUUUU ......................(((((((((((---------------------....))))))))))).(((((((((......(((.......))).......)))))))))... ( -17.02) >consensus GCUCUCUUUUGGUUCCUUUAAUUUACAUGUAUU_____________________UUCUAAUAUAUGUGGUAUCAUUUAAAUCAUUCCAGUCCAAAUGGUUAAAAUUUAAAUGAUUUU ......................(((((((((((.........................)))))))))))..((((((((((....(((.......))).....)))))))))).... (-11.42 = -11.98 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:49 2006