| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,705,355 – 17,705,472 |
| Length | 117 |
| Max. P | 0.584419 |
| Location | 17,705,355 – 17,705,472 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 89.64 |
| Mean single sequence MFE | -34.95 |
| Consensus MFE | -29.43 |
| Energy contribution | -30.07 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.584419 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17705355 117 - 22407834 UUCACCGAACGCGAACAGGAAACGGUGCUCGAGGGCGAACCGAUUGGCACCAAAGUGACACAAGUGAACGCCAUCGACAAGGAUGGCACAUUUCCAAAUAAUCAGGUGAGCAUCA---GA ((((((...(((.....(....)((((((...((.....))....))))))...)))....(((((...((((((......)))))).)))))...........)))))).....---.. ( -36.00) >DroPse_CAF1 32827 116 - 1 UUCACCGAACGCGAACAGGAAACGGUGCUGGAGGGCGAACCGAUUGGCACCAAAGUGACACAAGUGAAUGCGAUCGACAAGGACGGCACAUUCCCGAAUAAUCAGGUGAGU-GCA---CG .....(((.((((.((.(....)(((((..(.((.....))..)..)))))............))...)))).))).......((((((...((.((....)).))...))-)).---)) ( -34.10) >DroWil_CAF1 1454 120 - 1 UUCACCGAACGGGAACAGGAAACGGUGCUCGAGGGCGAACCAAUUGGUACCAAAGUGACACAAGUGAAUGCCAUUGACAAGGAUGGCACAUUCCCGAAUAAUCAGGUGAGCAAUAAGUGA ((((((((.((((((..(....)((((((....((....))....)))))).................(((((((......)))))))..)))))).....)).)))))).......... ( -34.70) >DroMoj_CAF1 2079 114 - 1 UUCACCGAACGCGAACAGGAAACGGUGCUGGAGGGCGAGCCGAUUGGCACCAAAGUGACGCAAGUGAACGCCAUUGACAAGGAUGGCACAUUCCCAAAUAAUCAGGUGACUAAC------ .(((((....(((.((.(....)(((((..(..((....))..)..)))))...))..)))........((((((......)))))).................))))).....------ ( -37.60) >DroAna_CAF1 17412 112 - 1 UUCACCGAACGCGAACAGGAAACGGUGCUCGAGGGUGAACCGAUUGGCACAAAAGUGACACAAGUGAACGCCAUCGACAAGGAUGGCACAUUCCCAAAUAAUCAGGUGAGUA-------- ((((((...(((.....(....).((((.(((.((....))..)))))))....)))............((((((......)))))).................))))))..-------- ( -34.10) >DroPer_CAF1 33371 116 - 1 UUCACCGAACGCGAACAGGAAACGGUGCUGGAGGGCGAACCGAUUGGCACCAAAGUGACACAAGUGAAUGCGAUCGACAAGGACGGCACAUUCCCCAAUAAUCAGGUGAGU-GCA---CG .....(((.((((.((.(....)(((((..(.((.....))..)..)))))............))...)))).))).......((((((..((.((........)).))))-)).---)) ( -33.20) >consensus UUCACCGAACGCGAACAGGAAACGGUGCUCGAGGGCGAACCGAUUGGCACCAAAGUGACACAAGUGAACGCCAUCGACAAGGAUGGCACAUUCCCAAAUAAUCAGGUGAGUAACA_____ .(((((...(((.....(....)((((((...((.....))....))))))...)))............((((((......)))))).................)))))........... (-29.43 = -30.07 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:46 2006