Locus 634

Sequence ID 2L_DroMel_CAF1
Location 1,878,208 – 1,878,306
Length 98
Max. P 0.565973
window1034

overview

Window 4

Location 1,878,208 – 1,878,306
Length 98
Sequences 3
Columns 112
Reading direction reverse
Mean pairwise identity 79.94
Mean single sequence MFE -25.07
Consensus MFE -17.55
Energy contribution -18.00
Covariance contribution 0.45
Combinations/Pair 1.17
Mean z-score -1.52
Structure conservation index 0.70
SVM decision value 0.06
SVM RNA-class probability 0.565973
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1878208 98 - 22407834
--------------GGCUCUGAAAAUAAGGUCUUACAAAUGUAAGGCUUAAUUACGCGAAUUGGAUUGCAAGUUUUUCGUGAGCUUGCUUUCGUAUCAAUCAACUUUAAUUU
--------------.....(((.(((.(((((((((....))))))))).)))..(((((.......((((((((.....)))))))).))))).))).............. ( -23.30)
>DroSec_CAF1 47717 106 - 1
CCAAUUGGUCAG--GACUCUGAAAAUGAGGUCUUACAAAUGUAAGGCUUAAUCAUGCGAAUUGGGUUGCAAGUUUUUCGUGAGC----UUUCGUAUCAAUCAACUUUAAUUU
...(((((((..--(((((((((((..(((((((((....))))))))).....(((((......)))))...)))))).))).----))..).))))))............ ( -24.30)
>DroEre_CAF1 46403 110 - 1
CGAAUUGGUCAGCGGACUCUGAAAAUAAGGUCUUGCAAAUGUAGGGCUUAAUUAUGCAAA-UGGGUUACAAGUUUCUCGAGAGUUUGCUUUC-AAUCAAUCAACUUUAAUUU
.((.((((..((((((((((...(((.(((((((((....))))))))).))).......-((((..(....)..)))))))))))))).))-))))............... ( -27.60)
>consensus
C_AAUUGGUCAG__GACUCUGAAAAUAAGGUCUUACAAAUGUAAGGCUUAAUUAUGCGAAUUGGGUUGCAAGUUUUUCGUGAGCUUGCUUUCGUAUCAAUCAACUUUAAUUU
..............(((((((((((..(((((((((....)))))))))......((((......))))....)))))).)))))........................... (-17.55 = -18.00 +   0.45) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:29 2006