Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,878,208 – 1,878,306 |
Length | 98 |
Max. P | 0.565973 |
Location | 1,878,208 – 1,878,306 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 79.94 |
Mean single sequence MFE | -25.07 |
Consensus MFE | -17.55 |
Energy contribution | -18.00 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.17 |
Mean z-score | -1.52 |
Structure conservation index | 0.70 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.565973 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1878208 98 - 22407834 --------------GGCUCUGAAAAUAAGGUCUUACAAAUGUAAGGCUUAAUUACGCGAAUUGGAUUGCAAGUUUUUCGUGAGCUUGCUUUCGUAUCAAUCAACUUUAAUUU --------------.....(((.(((.(((((((((....))))))))).)))..(((((.......((((((((.....)))))))).))))).))).............. ( -23.30) >DroSec_CAF1 47717 106 - 1 CCAAUUGGUCAG--GACUCUGAAAAUGAGGUCUUACAAAUGUAAGGCUUAAUCAUGCGAAUUGGGUUGCAAGUUUUUCGUGAGC----UUUCGUAUCAAUCAACUUUAAUUU ...(((((((..--(((((((((((..(((((((((....))))))))).....(((((......)))))...)))))).))).----))..).))))))............ ( -24.30) >DroEre_CAF1 46403 110 - 1 CGAAUUGGUCAGCGGACUCUGAAAAUAAGGUCUUGCAAAUGUAGGGCUUAAUUAUGCAAA-UGGGUUACAAGUUUCUCGAGAGUUUGCUUUC-AAUCAAUCAACUUUAAUUU .((.((((..((((((((((...(((.(((((((((....))))))))).))).......-((((..(....)..)))))))))))))).))-))))............... ( -27.60) >consensus C_AAUUGGUCAG__GACUCUGAAAAUAAGGUCUUACAAAUGUAAGGCUUAAUUAUGCGAAUUGGGUUGCAAGUUUUUCGUGAGCUUGCUUUCGUAUCAAUCAACUUUAAUUU ..............(((((((((((..(((((((((....)))))))))......((((......))))....)))))).)))))........................... (-17.55 = -18.00 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:29 2006