| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,672,934 – 17,673,036 |
| Length | 102 |
| Max. P | 0.500000 |
| Location | 17,672,934 – 17,673,036 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.63 |
| Mean single sequence MFE | -26.89 |
| Consensus MFE | -13.86 |
| Energy contribution | -14.80 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.52 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17672934 102 + 22407834 -----------GCUCUCUGUUGCAUUUUAAUUACAUUUGCAUAAGAUGCAGCUUAUCUGCCCCUUGCCAUGCUUC---GUUGCAGUUUUCAGUUUGCGCAA----GGCGGGAGCACUAAA -----------((((((.(((((((((((............))))))))))).........((((((..(((...---...)))((.........))))))----)).))))))...... ( -31.30) >DroSim_CAF1 50955 102 + 1 -----------GCUCUCUGUUGCAUUUUAAUUACAUUUGCAUAAGAUGCAGCUUAUCUGCCCCUUGCCAUGCUUC---GUUGCAGUUUUCAGUUUGCGCGA----GGCGGCAGCACUAAA -----------((.....(((((((((((............)))))))))))............((((..(((((---((.((((........))))))))----)))))))))...... ( -31.70) >DroEre_CAF1 55797 102 + 1 -----------GCUCUCUGUUGCAUUUUAAUUACAUUUGCAUAAGAUGCAGCUUAUCUGCCCCUUGCCAUGCUUC---GUUGCAGUUUUCAGUUUGCGCAA----GGCGGCAGCACUAAA -----------.......(((((((((((............)))))))))))....(((((((((((..(((...---...)))((.........))))))----)).)))))....... ( -31.40) >DroWil_CAF1 31785 117 + 1 UUGGCUCUUUCUCUCACUGUUGCAUUUUAAUUACAUUUGCAUAAGAUGCAGCUUAUCUGCUCUAUGCCAUGCCUCUGAGUUGCACCAUC---GUAACGAAAAAAGAGAAGCAGGAAUAAA .((((.............(((((((((((............))))))))))).............))))(((((((..(((((......---)))))......))))..)))........ ( -26.27) >DroYak_CAF1 72211 102 + 1 -----------GCUCUCUGUUGCAUUUUAAUUACAUUUGCAUAAGAUGCAGCUUAUCUGCCCCUUUCCAUGCUUC---GUUGCAGUUUUCAGUUUGCGCAA----GGCGGCAGCACUAAA -----------.......(((((((((((............)))))))))))....(((((((((.(..(((...---...)))((.........))).))----)).)))))....... ( -24.80) >DroAna_CAF1 49722 82 + 1 -----------GCUCUCUGUUGCAUU-UAAUUACAUUUGCAUAAGAUGCAGCUUAUCUGCCCC-UGCCACGCCUC---GUUGCAGCUUUCACUUGGUG---------------------- -----------((.....((((((((-(...............)))))))))......))..(-(((.(((...)---)).)))).............---------------------- ( -15.86) >consensus ___________GCUCUCUGUUGCAUUUUAAUUACAUUUGCAUAAGAUGCAGCUUAUCUGCCCCUUGCCAUGCUUC___GUUGCAGUUUUCAGUUUGCGCAA____GGCGGCAGCACUAAA ..................(((((((((((............)))))))))))....(((((((......(((.......................))).......)).)))))....... (-13.86 = -14.80 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:33 2006