Locus 6330

Sequence ID 2L_DroMel_CAF1
Location 17,663,088 – 17,663,178
Length 90
Max. P 0.924510
window10118

overview

Window 8

Location 17,663,088 – 17,663,178
Length 90
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 91.45
Mean single sequence MFE -15.83
Consensus MFE -14.31
Energy contribution -14.37
Covariance contribution 0.06
Combinations/Pair 1.10
Mean z-score -1.65
Structure conservation index 0.90
SVM decision value 1.16
SVM RNA-class probability 0.924510
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17663088 90 - 22407834
UUCAUUAAGAAACUCGC-------------UCUCCCUUUGAAUUUCAAUUUACACGCUUCGCACACCGCGAGGCUGCUUAAAUAUUUAAAAGUUCAAACAAGU
.................-------------......(((((((((..(((((((.(((((((.....)))))))))..)))))......)))))))))..... ( -16.00)
>DroSec_CAF1 58708 90 - 1
UUCAUUAAGAAACUCGC-------------UCUCCCUUUGAAUUUCAAUUUACACGCUUCGCACACCGCGAGGCUACUUAAAUAUUUAAAAGUUCAAACAAGU
.................-------------......(((((((((..(((((...(((((((.....)))))))....)))))......)))))))))..... ( -15.50)
>DroSim_CAF1 41176 90 - 1
UUCAUUAAGAAACUCGC-------------UCUCCCUUUGAAUUUCAAUUUACACGCUUCGCACACCGCGAGGCUGCUUAAAUAUUUAAAAGUUCAAACAAGU
.................-------------......(((((((((..(((((((.(((((((.....)))))))))..)))))......)))))))))..... ( -16.00)
>DroEre_CAF1 46044 90 - 1
UUCAUUAAGAAACUCGC-------------UCUCCCUUUGAAUUUCAAUUUACACGCUUCGCACACCGCGAGGCUGCUUAAAUAUUUAAAAGUUCAAACAAGU
.................-------------......(((((((((..(((((((.(((((((.....)))))))))..)))))......)))))))))..... ( -16.00)
>DroYak_CAF1 62413 96 - 1
UUCAUUAAGAAACUCGCUCUC-------GCUCUCCCUUUGAAUUUCAAUUUACACGCUUCGCACACCGCGAGGCUCCUUAAAUAUUUAAAAGUUCAAACAAGU
...............((....-------))......(((((((((..(((((...(((((((.....)))))))....)))))......)))))))))..... ( -16.20)
>DroAna_CAF1 39822 103 - 1
UUCAUUAAGAAACUCGCUGCCAAGUUGCCGUCUCCUUUUGAAUUUCAAUUUACACGCUCCGCACACCGCGAUGCUACUUAAAUAUUUAAGAGUUUAAACAAGU
.........((((((......((((((...((.......))....))))))....((..(((.....)))..))...............))))))........ ( -15.30)
>consensus
UUCAUUAAGAAACUCGC_____________UCUCCCUUUGAAUUUCAAUUUACACGCUUCGCACACCGCGAGGCUGCUUAAAUAUUUAAAAGUUCAAACAAGU
....................................(((((((((..(((((...(((((((.....)))))))....)))))......)))))))))..... (-14.31 = -14.37 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:28 2006