Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,873,994 – 1,874,090 |
Length | 96 |
Max. P | 0.805582 |
Location | 1,873,994 – 1,874,090 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 88.12 |
Mean single sequence MFE | -23.15 |
Consensus MFE | -16.93 |
Energy contribution | -17.43 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -3.66 |
Structure conservation index | 0.73 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.805582 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1873994 96 - 22407834 ACAUAAAAGCCGGCAUUUAUUCGAGGCACUGGCAACAUAAUGUUGCCACAUGCAACACACCCACGC-CA--ACACUCCACGCACAAACACAACC--ACACA ...........(((...........(((.(((((((.....)))))))..)))...........))-).--.......................--..... ( -18.45) >DroSec_CAF1 43475 98 - 1 ACAUAAAAGCCGGCAUUUAUUCGAGGCAGUGGCAACAUUAUGUUGCCACAUGCAACACACCCACGC-CA--ACACUCCACGCACAAACACAACCGCACACA ...........(((...........(((((((((((.....)))))))).)))...........))-).--.........((............))..... ( -22.85) >DroSim_CAF1 42432 98 - 1 ACAUAAAAGCCGGCAUUUAUUCGAGGCAGUGGCAACAUUAUGUUGCCACAUGCAACACACCCACGC-CA--ACACUCCACGCACAAACACAAGCACACACA ...........(((...........(((((((((((.....)))))))).)))...........))-).--.........((..........))....... ( -23.05) >DroEre_CAF1 42334 96 - 1 ACAUAAAAGCCGGCAUUUAUUCGAGGCAGUGGCAACAUUAUGUUGCCACAUGCAACACACCCACGC-CA--GCACUCCGCGCACCAACACAACC--GCACA ........((.(((...........(((((((((((.....)))))))).)))...........))-).--)).....(((............)--))... ( -27.35) >DroYak_CAF1 43105 96 - 1 ACAUAAAAGCCGGCAUUUAUUCGAGGCAGUGGCAACAUAAUGUUGCCACAUGCAGCACACCCACGC-CA--ACCCUCCUCGCACAAACACAGCC--GCACA ........((.(((.......(((((((((((((((.....)))))))).))).((........))-..--......))))..........)))--))... ( -28.13) >DroAna_CAF1 45190 99 - 1 ACAUAAAAGCCGGCAUUUAUUCGUGGCAACGGCAACAUAAUGUUGCCACAUGCAACACGCUUCCACCCAACACACUUUACGCACGUACAAAAAU--ACGCU .......(((..((........(((((((((.........)))))))))..((.....))....................))..(((......)--))))) ( -19.10) >consensus ACAUAAAAGCCGGCAUUUAUUCGAGGCAGUGGCAACAUAAUGUUGCCACAUGCAACACACCCACGC_CA__ACACUCCACGCACAAACACAACC__ACACA ........(((((.......)))..(((((((((((.....)))))))).)))...........................))................... (-16.93 = -17.43 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:28 2006