| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,631,443 – 17,631,540 |
| Length | 97 |
| Max. P | 0.699070 |
| Location | 17,631,443 – 17,631,540 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 66.78 |
| Mean single sequence MFE | -27.85 |
| Consensus MFE | -10.20 |
| Energy contribution | -9.51 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.37 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.699070 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17631443 97 + 22407834 UGUUGCAAAUGGCCAGAAGAGGCCAAGAGGUCA---ACCAUCCACUUGAGCUUCGAACUUGAUGGUCGAAAAGAGUUGGGCCAUGGCAAUACAAAGAGGA ((((((..((((((....(((((((((.((...---.....)).)))).))))).(((((..(......)..))))).)))))).))))))......... ( -31.80) >DroSec_CAF1 26934 97 + 1 UGUUGCAAAUGGCCAGAAGAGGUCAAGAGGUCA---GCCAUCCACUUGAGCUCCGAUCUUGAUGGCCGAAAAGAGUUGGGCCAUGCCCAUACAAAGUGGA ..(..(...((((((...((((((..(((.(((---(........)))).))).))))))..))))))......(((((((...))))).))...)..). ( -33.50) >DroYak_CAF1 27725 86 + 1 UGU----------UGGAAAAGGCCAAGAGGUCA---GCCAUUCACUUGAGCUCCGAUCUUGAUGGCC-AAAAGAGUUUGGCCAGGCCAAUACAAAAAGGA ...----------.......((((..(((((((---((((......)).)))..))))))..(((((-(((....))))))))))))............. ( -29.20) >DroAna_CAF1 8303 80 + 1 UUUCGGAAAUUACCACAA-AUUUCGGGAGGCCAACUGCCAGGCACUUGAACUCC--------------AAAAGAGUUUGACU-----AACAAAAAGCUGA ....((......)).(((-((((..((((..(((.(((...))).)))..))))--------------....)))))))...-----............. ( -16.90) >consensus UGUUGCAAAUGGCCAGAAGAGGCCAAGAGGUCA___GCCAUCCACUUGAGCUCCGAUCUUGAUGGCC_AAAAGAGUUGGGCCAUGCCAAUACAAAGAGGA ....................((((....(((.....))).........(((((...................))))).)))).................. (-10.20 = -9.51 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:22 2006