Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,866,444 – 1,866,534 |
Length | 90 |
Max. P | 0.992547 |
Location | 1,866,444 – 1,866,534 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 72.41 |
Mean single sequence MFE | -30.68 |
Consensus MFE | -19.40 |
Energy contribution | -18.60 |
Covariance contribution | -0.80 |
Combinations/Pair | 1.39 |
Mean z-score | -2.30 |
Structure conservation index | 0.63 |
SVM decision value | 2.34 |
SVM RNA-class probability | 0.992547 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1866444 90 - 22407834 CUGGGGCUUCAUCGAGAGCUUCCUGUUCCUGUACCUCAAGGAACUGGGUGCUCCGAACUACCUGCUGGGUGAGUUUAAUAUC------------GAAG---UUAA---- ....((((((.(((.((((.(((.((((((........)))))).))).)))))))((((((.....))).)))........------------))))---))..---- ( -32.60) >DroVir_CAF1 49231 98 - 1 CUGGGGCUUUAUCGAGAGCUUUCUAUUUUUGUAUCUCAAGGAGCUGGGCGCUCCUAACUACUUGUUGGGUAAGUUCACGCAAUUCU-----------GCCCUCAUUGCC ..(((((......((((((...........)).)))).(((((((((((...((((((.....))))))...))))).))..))))-----------)))))....... ( -28.20) >DroPse_CAF1 39248 86 - 1 UUGGGGCUUCAUCGAGAGCUUUCUUUUCCUGUAUCUGAAGGAAUUGGGGGCACCCAACUAUCUGCUUGGUGAGUUCUC----------------GUCG---UCAU---- ..(((..(((((((((.(((..(..(((((........)))))..)..)))...((......)))))))))))..)))----------------....---....---- ( -27.90) >DroEre_CAF1 34694 101 - 1 CUGGGGCUUCAUCGAGAGCUUCCUGUUCCUGUACCUCAAGGAACUGGGGGCUCCAAACUACCUGCUGGGUGAGUUUAUCCGCCCUGGCCAAUUUG-AG---UUAU---- (..((((......(.((((((((.((((((........)))))).)))))))))((((((((.....))).)))))....))))..)........-..---....---- ( -40.40) >DroYak_CAF1 35433 79 - 1 UUGGGGCUUCAUCGAGAGCUUCCUGUUCUUGUAUCUCAAGGAACUCGGAGCUCCAAACUACCUGCUGGGUAAGUUUUCC------------------------------ .(((((((((..(((((((.....)))))))..((.....))....)))))))))(((((((.....))).))))....------------------------------ ( -26.10) >DroPer_CAF1 39262 86 - 1 UUGGGGCUUCAUCGAGAGCUUCCUCUUCCUGUAUCUGAAGGAAUUGGGGGCACCCAACUAUCUGCUUGGUGAGUUCUC----------------GUCG---UCAU---- ..(((..(((((((((.((((((..(((((........)))))..))))))...((......)))))))))))..)))----------------....---....---- ( -28.90) >consensus CUGGGGCUUCAUCGAGAGCUUCCUGUUCCUGUAUCUCAAGGAACUGGGGGCUCCAAACUACCUGCUGGGUGAGUUCAC________________G__G___UCAU____ ...(((((.....(.((((((((..(((((........)))))..)))))))))....((((.....)))))))))................................. (-19.40 = -18.60 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:27 2006