| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,613,110 – 17,613,212 |
| Length | 102 |
| Max. P | 0.938936 |
| Location | 17,613,110 – 17,613,212 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 72.89 |
| Mean single sequence MFE | -36.77 |
| Consensus MFE | -20.67 |
| Energy contribution | -21.54 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.56 |
| SVM decision value | 1.27 |
| SVM RNA-class probability | 0.938936 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17613110 102 + 22407834 C-----CCGGAUCCAUUCCAUUGCCAUGAGAGACC--CCGUCGGAAGAUGACGGGCCAUGACGGACCAUGGCU------GGGGAUCUAAGUACAUAUAGCCCCGGAGCAAUAAAC .-----..(((.....)))(((((..........(--((((((.....)))))))(((((......)))))((------((((..(((........))))))))).))))).... ( -33.50) >DroEre_CAF1 16836 104 + 1 C-----CCGGAUCCAUUCCAUUGCCAUGGGAGACCCCCCGUCAGAAGAUGACGGGCCAUGACGGACCAUGGCU------GGGGAUCUAAGUACAUAUAGCCCCGGGGCAAUAAAC .-----..(((.....)))((((((.(((((((((((((((((.....))))))((((((......)))))).------)))).)))..((.......)))))).)))))).... ( -44.70) >DroAna_CAF1 14486 106 + 1 CAAGCUCGGGAGCCAU-CAGCUUCCAGGACAGCCA--CUGACAGUUCUUGGCGA------ACGGACCAUGGCAACCUCGACGGCUCUAAGUACAUAUAGCCCCGGAGCAAUAAAC ...((((((((((...-..)))))).((...((((--.((...((((.....))------))....)))))).........((((.((......)).)))))).))))....... ( -32.10) >consensus C_____CCGGAUCCAUUCCAUUGCCAUGAGAGACC__CCGUCAGAAGAUGACGGGCCAUGACGGACCAUGGCU______GGGGAUCUAAGUACAUAUAGCCCCGGAGCAAUAAAC ........((((((........((((((........(((((((.....)))))))...........)))))).........))))))...........((......))....... (-20.67 = -21.54 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:07 2006