| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,603,951 – 17,604,043 |
| Length | 92 |
| Max. P | 0.888948 |
| Location | 17,603,951 – 17,604,043 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 80.19 |
| Mean single sequence MFE | -28.28 |
| Consensus MFE | -19.00 |
| Energy contribution | -20.75 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.888948 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17603951 92 + 22407834 ----------------------UCCCUGGC--GAGCCUGGCGAAAGCCGAACCGAAAUUUCAGCCACCCAAUCAGCAUAUUUAAAUUGUGUUGUGUUUGGUGAUUGAAAUGCAUGA ----------------------......((--.....((((....)))).......((((((..((((.((((((((((.......))))))).))).))))..)))))))).... ( -29.20) >DroSec_CAF1 9100 92 + 1 ----------------------UCCCUGGC--GAGCCCGGCGAAAGCCGAACCAAAAUUUCAGCCACCCAAUCAGCAUAUUUAAAUUGUGUUGUGUUUGGUGAUUGAAAUGCAUGA ----------------------......((--.....((((....)))).......((((((..((((.((((((((((.......))))))).))).))))..)))))))).... ( -31.20) >DroEre_CAF1 7568 91 + 1 ----------------------UCCCUGGC--GAGC-UGGUGAGAGCCGAAACGAAAUUUCAGCCACCCAAUCAGCAUAUUUAAAUUGUGUUGAGCUUGGUGAUUGAAAUGCAUGA ----------------------......((--....-((((....)))).......((((((..((((...((((((((.......))))))))....))))..)))))))).... ( -27.60) >DroYak_CAF1 7781 92 + 1 ----------------------UCCCUGGC--GAGCCUGGCGAAAGCCGAACCGAAAUUUCAGCCACCCAAUCAGCAUAUUUAAAUUGUGUUGUGCUUGGUGAUUGAAAUGCAUGA ----------------------......((--.....((((....)))).......((((((..((((....(((((((.......))))))).....))))..)))))))).... ( -28.10) >DroMoj_CAF1 8218 113 + 1 CGCCGCUCCCGGUCUGUUCCUGUUCCUAGUUUUUGC-UGGUGACG-AGCAAACCAAAUUUCCG-CACCCAAUCAGCAUAUUUAAAUUGUGUUGUGUUUUGUGAUUGAAAUGCAUGA ....((....(((.(((((..((..(((((....))-)))..)))-)))).)))..(((((..-(((..((((((((((.......))))))).)))..)))...))))))).... ( -30.30) >DroAna_CAF1 6605 88 + 1 ----------------------UCCCCAAC--GGGCCUGAU----GGCCAACCGAAAUUUCAGCCACCCAAUCAGCAUAUUUAAAUUGUGUUGUGUUUGGUGAUCGAAAUGCAUGA ----------------------........--.((((....----)))).......(((((...((((.((((((((((.......))))))).))).))))...)))))...... ( -23.30) >consensus ______________________UCCCUGGC__GAGCCUGGCGAAAGCCGAACCGAAAUUUCAGCCACCCAAUCAGCAUAUUUAAAUUGUGUUGUGUUUGGUGAUUGAAAUGCAUGA ..................................((..(((....)))........(((((((.((((.((((((((((.......))))))).))).)))).))))))))).... (-19.00 = -20.75 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:06 2006