| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,586,420 – 17,586,510 |
| Length | 90 |
| Max. P | 0.619205 |
| Location | 17,586,420 – 17,586,510 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 75.85 |
| Mean single sequence MFE | -41.43 |
| Consensus MFE | -23.32 |
| Energy contribution | -23.15 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.619205 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17586420 90 - 22407834 ACUUCCGCUGGCGCC---------------ACCACUGGACACGGCCACCGUGGUGGUGCCACCACUGAUGGCAAUGGCUGCGAUGGCGGCGGCCGUGGGACUCAA ..(((((((((((((---------------((((((((......)))..))))))))))))........(((....(((((....))))).)))))))))..... ( -45.50) >DroPse_CAF1 108698 93 - 1 ACUGCCUCCGGGCCCGCCGCUCGA------ACCACUGGACAGGGCCACUGUGGUGGUGCCGCCGCUGAUGGCA------GCAAUCGCAGCCGCAGUCGGACUCAA ..((..(((((((((.(((.....------.....)))...)))))((((((((..(((.((((....)))).------)))......))))))))))))..)). ( -38.90) >DroSim_CAF1 102331 90 - 1 ACUUCCGCUGGCGCC---------------ACCACUGGACACGGCCACCGUGGUGGUGCCACCACUGAUGGCAAUGGCUGCUAUGGCGGCGGCCGUGGGACUCAG ..(((((((((((((---------------((((((((......)))..))))))))))))........(((....(((((....))))).)))))))))..... ( -45.70) >DroWil_CAF1 170626 99 - 1 ACUGCCUCCAGGUGCGCCACUCAAGCCAAUACCACUGGAUAGUGCUACAGUGGUGGUGCCACCACUUAUGGCA------GCUAUGGCCGCCGCUGUGGGACUCAA ......(((((.((.((.......))))......))))).(((.(((((((((((((((..(((....)))..------))....))))))))))))).)))... ( -36.70) >DroYak_CAF1 104103 90 - 1 ACUUCCGCUGGCUCC---------------ACCACUGGACACGGCCACCGUGGUGGUGCCACCACUGAUGGCAAUGGCUGCGAUGGCGGCGGCCGUGGGACUCAG ..((((((((((.((---------------((((((((......)))..))))))).))))........(((....(((((....))))).)))))))))..... ( -41.90) >DroPer_CAF1 109194 93 - 1 ACUGCCUCCGGGCCCGCCGCUCGA------ACCACUCGACAGGGCCACUGUGGUGGUGCCGCCGCUGAUGGCA------GCAAUCGCAGCCGCAGUCGGACUCAA ..((..(((((((((...(.((((------.....))))).)))))((((((((..(((.((((....)))).------)))......))))))))))))..)). ( -39.90) >consensus ACUGCCGCCGGCCCC_______________ACCACUGGACACGGCCACCGUGGUGGUGCCACCACUGAUGGCA______GCAAUGGCGGCCGCCGUGGGACUCAA ...............................((((.((...(((((((.((((((....)))))).).)))).......((....))..)).))))))....... (-23.32 = -23.15 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:59 2006