Locus 6309

Sequence ID 2L_DroMel_CAF1
Location 17,580,357 – 17,580,462
Length 105
Max. P 0.724490
window10081

overview

Window 1

Location 17,580,357 – 17,580,462
Length 105
Sequences 3
Columns 107
Reading direction forward
Mean pairwise identity 77.74
Mean single sequence MFE -19.87
Consensus MFE -13.39
Energy contribution -13.28
Covariance contribution -0.11
Combinations/Pair 1.09
Mean z-score -1.60
Structure conservation index 0.67
SVM decision value 0.41
SVM RNA-class probability 0.724490
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17580357 105 + 22407834
AAGAAGGAAGCUACUAAACGAUACAGAAGGUACACGUUAUAAUGUUUCGGAAAUAGAGAAUAU--AAUAGUAUUCCUUUUCAAUCUGAAAUAGCCCAUGUGACUUUG
.((.((....)).))...........(((((.(((((.....(((((((((...((.((((((--....))))))))......)))))))))....)))))))))). ( -21.30)
>DroSec_CAF1 97171 107 + 1
AAGAAGGAAUCUACUAAGCGAUACAGAAGAUACACGCUAUAAUGUAUCGGAAAUAGAGAAUAUUCGAUGGUAUUCCUUUUCAAUGUGAAAUAGCAUAUGUGACUUUG
..(((((((..(((((..(((((((....(((.....)))..)))))))......(((....)))..))))))))))))((((((((......))))).)))..... ( -19.80)
>DroSim_CAF1 96097 81 + 1
AAGAAGGAAUCUACUAAGCGAUACAGAAGAUACACGUUAUGAUGUAUCGGAAAUAGA----------UAGUAUUCCUUUUCAAUCUGAAAU----------------
.(((((((((((((((..(((((((...(((....)))....)))))))....))).----------))).)))))))))...........---------------- ( -18.50)
>consensus
AAGAAGGAAUCUACUAAGCGAUACAGAAGAUACACGUUAUAAUGUAUCGGAAAUAGAGAAUAU___AUAGUAUUCCUUUUCAAUCUGAAAUAGC__AUGUGACUUUG
.((((((((..(((((..(((((((....(((.....)))..)))))))..................)))))))))))))........................... (-13.39 = -13.28 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:54 2006