| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,565,826 – 17,565,928 |
| Length | 102 |
| Max. P | 0.715908 |
| Location | 17,565,826 – 17,565,928 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 86.08 |
| Mean single sequence MFE | -23.37 |
| Consensus MFE | -16.29 |
| Energy contribution | -19.04 |
| Covariance contribution | 2.75 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.715908 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17565826 102 - 22407834 AAAUUACUUUCUUUGAAGCUACACAUAUG----UAUAUGUGUUAACUUCACUCAUCCUAUUUCGUAUUAAUGGAUGAAAUUCAAUCGUUUGCCAGAGACAGGCGGA .............(((((..(((((((..----..)))))))...))))).((((((.(((.......))))))))).......(((((((.......))))))). ( -23.40) >DroSec_CAF1 82178 106 - 1 AAAUUACUUUCUUUGAAGCUACACAUAUACUUACAUAUGUGUUAAAUUCACUCAUCCUAUGUCGUAUUAAUGGAUGAAAUUCAAUCGUGUGUCAGAGACAGGUGGA ...(((((((((((((.((.((((((((......)))))))).........((((((..............)))))).........))...))))))).)))))). ( -26.14) >DroSim_CAF1 82056 106 - 1 AAAUUACUUUCUUUGAAGCUACACAUAUACAUACAUAUGUGUUAAAUUCACUCAUCCUAUGUCGUAUUAAUGGAUGAAAUUCAAUCGUGUGUCAGAGACAGGCGGA .............((((...((((((((......))))))))....)))).((((((..............)))))).......((((.((((...)))).)))). ( -25.54) >DroYak_CAF1 82620 94 - 1 AAAUUACUUUCUUUGAAGCUU------------UAUAUGUGUGAAAUUCACUCAUCCCACGGAGUAUGAAUGGAUGAAAUUCAAUCGACUGUCAGAGACAGGCGGA ......((.(((((((.((((------------..((((.(((.....))).)))...)..)))).(((((.......)))))........))))))).))..... ( -18.40) >consensus AAAUUACUUUCUUUGAAGCUACACAUAUA____CAUAUGUGUUAAAUUCACUCAUCCUAUGUCGUAUUAAUGGAUGAAAUUCAAUCGUGUGUCAGAGACAGGCGGA .............((((...((((((((......))))))))....)))).((((((..............)))))).......(((((((((...))))))))). (-16.29 = -19.04 + 2.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:43 2006