Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 17,562,290 – 17,562,425 |
Length | 135 |
Max. P | 0.997464 |
Location | 17,562,290 – 17,562,396 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 88.04 |
Mean single sequence MFE | -35.80 |
Consensus MFE | -32.82 |
Energy contribution | -32.35 |
Covariance contribution | -0.47 |
Combinations/Pair | 1.12 |
Mean z-score | -2.88 |
Structure conservation index | 0.92 |
SVM decision value | 2.86 |
SVM RNA-class probability | 0.997464 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17562290 106 + 22407834 ----GUCCUUCGUCAUUUGGUACGUUUUUCUCCUGGUAUCCACUGUAGGCCUAUAUGUAUUUCCACCAUAAGGCACGCGGUGAAUGCCAAGAGCGAACGCAGUUCUACAA ----((((..........)).))((((..(((.((((((.((((((..((((.((((.........))))))))..)))))).)))))).))).))))............ ( -31.30) >DroVir_CAF1 93224 110 + 1 UCGUGAGUGCCGUCGUUUGGUACGUUUUUCUCCUGGUAUCCACUGUAGGCCUCUAUGAAUUUUGACCAUAAGGCACGCGGUGAAUGCCAAGAGCGAACGAAACUCUACAA ..((((((((((.....)))).(((((..(((.((((((.((((((..((((.((((.........))))))))..)))))).)))))).))).)))))..)))).)).. ( -40.70) >DroWil_CAF1 135788 100 + 1 ----------AGUCGUUUGGUACGUUUUUCUCCUGGUAUCCACUGCAGGCCUAUAUGUUAUUUGACCAUAAGGCACGCGGUGAAUGCCAAGAGCGAACGAAAUUCUACAA ----------..(((((((..........(((.((((((.((((((..((((.((((.........))))))))..)))))).)))))).)))))))))).......... ( -34.10) >DroMoj_CAF1 90595 110 + 1 CCGUGAGUGACGUCGUUUGGUACGUUUUUCUCCUGGUAUCCACUGUAGGCCUCUAUGAAUUUUGACCAUAAGGCACGCGGUGAAUGCCAAGAGCGAACGAAACUCUACAA ..((((((....(((((((..........(((.((((((.((((((..((((.((((.........))))))))..)))))).)))))).)))))))))).)))).)).. ( -39.50) >DroAna_CAF1 85134 106 + 1 ----CUUUUGUGUCGUUUGGUACGUUUUUCUCCUGGUAUCCACUGUAGGCCUAUAUGUAUUUCGACCAUAAGGCACGCGGUGAAUGCCAAGAGCGAACGAAACUCUACAA ----...(((((..((((.((.((((((.....((((((.((((((..((((.((((.........))))))))..)))))).)))))))))))).)).))))..))))) ( -35.80) >DroPer_CAF1 84037 102 + 1 --------CUCGUCGUUUGGUACGUUUUUCUCCUGGUAUCCACUGUAGGCCUAUAUGUAUUUCGACCAUAAGGCACGCGGUGAAUGCCAAGAGCGGACGAAACUCUACUA --------.(((((((.....))......(((.((((((.((((((..((((.((((.........))))))))..)))))).)))))).)))..))))).......... ( -33.40) >consensus ____G__UGUCGUCGUUUGGUACGUUUUUCUCCUGGUAUCCACUGUAGGCCUAUAUGUAUUUCGACCAUAAGGCACGCGGUGAAUGCCAAGAGCGAACGAAACUCUACAA ..............((..(((.(((((..(((.((((((.((((((..((((.((((.........))))))))..)))))).)))))).))).)))))..)))..)).. (-32.82 = -32.35 + -0.47)
Location | 17,562,290 – 17,562,396 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 88.04 |
Mean single sequence MFE | -33.27 |
Consensus MFE | -27.52 |
Energy contribution | -27.97 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.03 |
Mean z-score | -2.35 |
Structure conservation index | 0.83 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.843951 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17562290 106 - 22407834 UUGUAGAACUGCGUUCGCUCUUGGCAUUCACCGCGUGCCUUAUGGUGGAAAUACAUAUAGGCCUACAGUGGAUACCAGGAGAAAAACGUACCAAAUGACGAAGGAC---- ((((.....((((((..(((((((.((((((.(...((((((((((....)).)))).))))...).)))))).)))))))...)))))).......)))).....---- ( -32.40) >DroVir_CAF1 93224 110 - 1 UUGUAGAGUUUCGUUCGCUCUUGGCAUUCACCGCGUGCCUUAUGGUCAAAAUUCAUAGAGGCCUACAGUGGAUACCAGGAGAAAAACGUACCAAACGACGGCACUCACGA ((((.((((.((((...(((((((.((((((.(...(((((((((.......)))).)))))...).)))))).))))))).....(((.....))))))).)))))))) ( -36.10) >DroWil_CAF1 135788 100 - 1 UUGUAGAAUUUCGUUCGCUCUUGGCAUUCACCGCGUGCCUUAUGGUCAAAUAACAUAUAGGCCUGCAGUGGAUACCAGGAGAAAAACGUACCAAACGACU---------- ((((.......((((..(((((((.((((((.(((.((((((((.........)))).)))).))).)))))).)))))))...))))......))))..---------- ( -34.62) >DroMoj_CAF1 90595 110 - 1 UUGUAGAGUUUCGUUCGCUCUUGGCAUUCACCGCGUGCCUUAUGGUCAAAAUUCAUAGAGGCCUACAGUGGAUACCAGGAGAAAAACGUACCAAACGACGUCACUCACGG .(((.((((..(((...(((((((.((((((.(...(((((((((.......)))).)))))...).)))))).))))))).....(((.....))))))..))))))). ( -34.90) >DroAna_CAF1 85134 106 - 1 UUGUAGAGUUUCGUUCGCUCUUGGCAUUCACCGCGUGCCUUAUGGUCGAAAUACAUAUAGGCCUACAGUGGAUACCAGGAGAAAAACGUACCAAACGACACAAAAG---- ((((...((((((((..(((((((.((((((.(...((((((((.........)))).))))...).)))))).)))))))...))))....))))...))))...---- ( -31.10) >DroPer_CAF1 84037 102 - 1 UAGUAGAGUUUCGUCCGCUCUUGGCAUUCACCGCGUGCCUUAUGGUCGAAAUACAUAUAGGCCUACAGUGGAUACCAGGAGAAAAACGUACCAAACGACGAG-------- ..........(((((..(((((((.((((((.(...((((((((.........)))).))))...).)))))).)))))))......((.....))))))).-------- ( -30.50) >consensus UUGUAGAGUUUCGUUCGCUCUUGGCAUUCACCGCGUGCCUUAUGGUCAAAAUACAUAUAGGCCUACAGUGGAUACCAGGAGAAAAACGUACCAAACGACGAAA__C____ ..((...((((((((..(((((((.((((((.(...((((((((.........)))).))))...).)))))).)))))))...))))....)))).))........... (-27.52 = -27.97 + 0.44)
Location | 17,562,316 – 17,562,425 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 80.14 |
Mean single sequence MFE | -26.55 |
Consensus MFE | -25.54 |
Energy contribution | -25.18 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.08 |
Mean z-score | -2.32 |
Structure conservation index | 0.96 |
SVM decision value | 1.73 |
SVM RNA-class probability | 0.974434 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17562316 109 + 22407834 UCCUGGUAUCCACUGUAGGCCUAUAUGUAUUUCCACCAUAAGGCACGCGGUGAAUGCCAAGAGCGAACGCAGUUCUACAAAUU--ACUCAUACCCAAUAAUAG--ACAGAAAG ...((((((.((((((..((((.((((.........))))))))..)))))).))))))(((((.......))))).......--..................--........ ( -28.00) >DroVir_CAF1 93254 112 + 1 UCCUGGUAUCCACUGUAGGCCUCUAUGAAUUUUGACCAUAAGGCACGCGGUGAAUGCCAAGAGCGAACGAAACUCUACAAUUAACAAAAAUAACAAACGACCUG-ACAAAAAG ...((((((.((((((..((((.((((.........))))))))..)))))).))))))((((.........))))............................-........ ( -25.90) >DroPse_CAF1 83832 106 + 1 UCCUGGUAUCCACUGUAGGCCUAUAUGUAUUUCGACCAUAAGGCACGCGGUGAAUGCCAAGAGCGGACGAAACUCUACUA-UC--AAAAACAGCAAACGAC----GCCAAAAG ((.((((((.((((((..((((.((((.........))))))))..)))))).)))))).))(((..((...........-..--............)).)----))...... ( -26.61) >DroWil_CAF1 135808 105 + 1 UCCUGGUAUCCACUGCAGGCCUAUAUGUUAUUUGACCAUAAGGCACGCGGUGAAUGCCAAGAGCGAACGAAAUUCUACAAAA---ACCAAAACGCAAAAAUAU--AAAAA--- ((.((((((.((((((..((((.((((.........))))))))..)))))).)))))).))(((.................---.......)))........--.....--- ( -27.46) >DroMoj_CAF1 90625 107 + 1 UCCUGGUAUCCACUGUAGGCCUCUAUGAAUUUUGACCAUAAGGCACGCGGUGAAUGCCAAGAGCGAACGAAACUCUACAA------AAUCCAACAAGCGACCUCUAAAAAAAG ...((((((.((((((..((((.((((.........))))))))..)))))).))))))((((.........))))....------........................... ( -25.90) >DroAna_CAF1 85160 102 + 1 UCCUGGUAUCCACUGUAGGCCUAUAUGUAUUUCGACCAUAAGGCACGCGGUGAAUGCCAAGAGCGAACGAAACUCUACAAACU--ACA-------AAUGACAU--AUUAAAAA ...((((((.((((((..((((.((((.........))))))))..)))))).))))))((((.........)))).......--...-------........--........ ( -25.40) >consensus UCCUGGUAUCCACUGUAGGCCUAUAUGUAUUUCGACCAUAAGGCACGCGGUGAAUGCCAAGAGCGAACGAAACUCUACAAAU___AAAAACAACAAACGACAU__ACAAAAAG ...((((((.((((((..((((.((((.........))))))))..)))))).))))))((((.........))))..................................... (-25.54 = -25.18 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:41 2006