Locus 6298

Sequence ID 2L_DroMel_CAF1
Location 17,542,903 – 17,542,996
Length 93
Max. P 0.633090
window10059

overview

Window 9

Location 17,542,903 – 17,542,996
Length 93
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 79.85
Mean single sequence MFE -16.85
Consensus MFE -11.24
Energy contribution -10.72
Covariance contribution -0.52
Combinations/Pair 1.42
Mean z-score -1.40
Structure conservation index 0.67
SVM decision value 0.20
SVM RNA-class probability 0.633090
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17542903 93 + 22407834
CA-----------UCAAUUUUUGGCAAGCGAAAAAUUUCAUAUCGUUCAUGUGGCAUUUAAAGAUGCCUACAUAAGCAAAAUUUUACUGCUGCAA-AACCAAAAU-----
..-----------.....((((((..((((((....))).....(((.((((((((((....)))))).)))).)))...........)))....-..)))))).----- ( -20.40)
>DroSec_CAF1 59833 94 + 1
CA-----------UUAAUCUUUGGCAAGCGAAAAAUUUCAUAACGUUCAUCUGGCAUUUAAAGAUGCUUACAUAAGCAAAACGUUACUGCUGCAAAAACCAAAAU-----
..-----------..........(((.(((((....))).(((((((.((((.........))))((((....))))..)))))))..)))))............----- ( -15.60)
>DroSim_CAF1 59268 94 + 1
CA-----------UCAAUCUUUGGCAAGCGAAAAAUUUCAUAACGUUCAUCUGGCAUUUAAAGAUGCUUACAUAAGCAAAACGUUACUGCUGCAAAAACCAAAAU-----
..-----------..........(((.(((((....))).(((((((.((((.........))))((((....))))..)))))))..)))))............----- ( -15.60)
>DroEre_CAF1 60986 93 + 1
CA-----------UCAAUCUUUGGCAAGCGAAAAAUUUCAUAUCGUUGAUUUGGCAUCUAAAGUUGCCUACACAAGCAAUAAGCUUCUGCUGCAA-AACCAAAAU-----
..-----------......(((((...((...............(((.....((((........))))......)))....(((....)))))..-..)))))..----- ( -15.20)
>DroYak_CAF1 61263 93 + 1
CU-----------UCAAUCUUUAACAAGCGAAAAAUUUCAUAUCGUUGAUUUGGCAUCUAAAGUUGCCUACACAAGCACAAAGCUACUGCUGCAA-AACCGAAAU-----
.(-----------((............(((((....)))......(((....((((........))))....)))))....(((....)))....-....)))..----- ( -12.30)
>DroPer_CAF1 63695 107 + 1
CGUAAAUCUGCACACAAUUCAUGGCAAAUGGAAAAUUUCAUAUCGUUGAUUUGGCAGUCAAAGCUGCCUAGACAAGCAAAAUGUUACAGCUCCAA-A--CAAAAGGGCCC
.((((...(((......(((((.....)))))............(((.....((((((....))))))..)))..))).....)))).((.((..-.--.....)))).. ( -22.00)
>consensus
CA___________UCAAUCUUUGGCAAGCGAAAAAUUUCAUAUCGUUCAUUUGGCAUUUAAAGAUGCCUACACAAGCAAAAAGUUACUGCUGCAA_AACCAAAAU_____
......................((((((((((....))).....(((.....((((((....))))))......))).....)))..))))................... (-11.24 = -10.72 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:33 2006